C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 130
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000520911 RNF130-002 ENSG00000113269 9606 - 5:179955480-180072113 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000520911
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000520911 29.976±0.00 32.392±0.00 1.676±0.00 16.498±7.21 23.735±20.46 19.827±16.52 12.044±9.69 29.388±7.39 34.208±31.09 23.218±19.17 12.491±0.69 24.421±16.46 23.095±11.13 25.069±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006915 IEA apoptotic process
GO:0008270 IEA zinc ion binding
GO:0012501 ISS programmed cell death
GO:0016021 IEA integral component of membrane
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102776 Rnf130-001 protein_coding Mus_musculus 0 1428
ENSMUST00000054684 Rnf130-002 protein_coding Mus_musculus 0 957
ENSMUST00000143607 Rnf130-003 processed_transcript Mus_musculus 0 392

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