C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: bone morphogenetic protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000520970 BMP1-009 ENSG00000168487 9606 + 8:22165187-22212324 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000520970
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000520970 2.096±0.00 2.276±0.00 0.088±0.00 1.406±0.00 1.042±0.77 0.450±0.00 2.110±0.00 1.778±0.00 2.047±0.00 5.439±0.67 9.888±4.13 3.106±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000810 CIL_000810_0001 VISTA 8:21687877-22288944
CIL_0008ZI CIL_0008ZI_0001 VISTA 8:21743578-22344815
CIL_000812 CIL_000812_0001 VISTA 8:21749915-22350771

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 NAS skeletal system development
GO:0001502 TAS cartilage condensation
GO:0001503 IEA ossification
GO:0004222 TAS:IEA metalloendopeptidase activity
GO:0005125 IEA cytokine activity
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005794 IEA Golgi apparatus
GO:0006508 IDA:IEA proteolysis
GO:0007275 TAS multicellular organismal development
GO:0008083 IEA growth factor activity
GO:0008233 IDA peptidase activity
GO:0008237 NAS:IEA metallopeptidase activity
GO:0008270 IEA zinc ion binding
GO:0022617 TAS extracellular matrix disassembly
GO:0030154 IEA cell differentiation
GO:0030198 TAS extracellular matrix organization
GO:0042157 TAS lipoprotein metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0061036 IDA positive regulation of cartilage development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022693 Bmp1-201 protein_coding Mus_musculus 0 2632
ENSDART00000127875 bmp1a-201 protein_coding Danio_rerio 0 1075
ENSMUST00000025986 Tll2-201 protein_coding Mus_musculus 0 1003
ENSDART00000054472 tll1-001 protein_coding Danio_rerio 0 701
ENSDART00000059795 bmp1b-201 protein_coding Danio_rerio 0 606
ENSMUST00000169941 Tll2-202 protein_coding Mus_musculus 0 379

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