C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: farnesyl-diphosphate farnesyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000525900 FDFT1-006 ENSG00000079459 9606 + 8:11802766-11838905 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000525900
Transcript ID Adrenal Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000525900 11.934±0.00 9.570±0.00 3.462±0.00 7.217±3.84 15.041±9.10 35.147±0.00 23.206±0.00 15.715±3.31 19.858±9.97 21.388±3.73 27.093±7.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Y4 CIL_0008Y4_0001 VISTA 8:11271783-11873892
CIL_000919 CIL_000919_0001 VISTA 8:11446673-12047186
CIL_0007PQ CIL_0007PQ_0001 VISTA 8:11649159-12249913

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004310 IEA farnesyl-diphosphate farnesyltransferase activity
GO:0005783 IDA endoplasmic reticulum
GO:0008610 IEA lipid biosynthetic process
GO:0009058 IEA biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0016740 IEA transferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000054963 Fdft1-201 protein_coding Mus_musculus 0 1205
ENSMUST00000038304 Gm6781-201 processed_pseudogene Mus_musculus 0 926

Loading