C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: nuclear RNA export factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000527902 NXF1-013 ENSG00000162231 9606 - 11:62792231-62796082 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLiverTestisENST00000527902
Transcript ID Kidney Liver Testis
ENST00000527902 23.619±0.00 8.289±0.00 21.496±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0001 VISTA 11:62298635-62900076

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006810 IEA transport
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000184826 Nxf1-010 protein_coding Mus_musculus 0 486
ENSMUST00000184970 Nxf1-002 protein_coding Mus_musculus 0 449
ENSMUST00000010241 Nxf1-001 protein_coding Mus_musculus 0 449
ENSMUST00000184808 Nxf1-007 retained_intron Mus_musculus 0 270
ENSMUST00000183898 Nxf1-008 processed_transcript Mus_musculus 0 270
ENSMUST00000185056 Nxf1-006 retained_intron Mus_musculus 2e-37 159

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