C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear RNA export factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000162231 NXF1 9606 - 11:62792123-62806302 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000294172 NXF1-201 62792126-62805492 protein_coding
  ENST00000525576 NXF1-010 62802004-62805440 nonsense_mediated_decay
  ENST00000526163 NXF1-011 62798845-62805440 processed_transcript
  ENST00000527064 NXF1-008 62803550-62805471 retained_intron
  ENST00000527497 NXF1-017 62792418-62794628 retained_intron
  ENST00000527902 NXF1-013 62792231-62796082 protein_coding
  ENST00000530875 NXF1-003 62794338-62805469 protein_coding
  ENST00000531131 NXF1-004 62800113-62805440 protein_coding
  ENST00000531474 NXF1-002 62803419-62804185 protein_coding
  ENST00000531579 NXF1-009 62796305-62805469 processed_transcript
  ENST00000531709 NXF1-006 62792123-62805470 protein_coding
  ENST00000531872 NXF1-016 62796149-62798606 retained_intron
  ENST00000532297 NXF1-001 62792171-62806302 protein_coding
  ENST00000533048 NXF1-014 62792353-62797058 processed_transcript
  ENST00000533440 NXF1-015 62794751-62796563 retained_intron
  ENST00000533499 NXF1-007 62792415-62795400 retained_intron
  ENST00000533671 NXF1-012 62801974-62805193 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000294172ENST00000525576ENST00000527902ENST00000530875ENST00000531131ENST00000531709ENST00000533048
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000294172 6.240±0.00 7.238±0.00 N/A 2.399±0.14 6.410±3.18 6.880±3.66 3.200±2.19 7.743±0.00 2.856±0.24 5.707±0.00 2.821±0.46 10.822±7.01 11.798±3.41 5.591±0.99
ENST00000525576 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.054±0.00 N/A N/A N/A
ENST00000527902 N/A N/A N/A N/A N/A N/A N/A 23.619±0.00 8.289±0.00 N/A N/A N/A N/A 21.496±0.00
ENST00000530875 N/A N/A 1.547±0.00 1.908±0.92 1.781±0.00 N/A N/A 1.480±0.00 1.609±0.00 N/A N/A N/A N/A N/A
ENST00000531131 N/A N/A N/A N/A 2.831±0.00 N/A 1.199±0.00 N/A N/A N/A N/A 11.529±7.33 15.718±0.00 19.844±0.00
ENST00000531709 5.223±0.00 9.817±0.00 1.848±0.00 2.461±1.69 1.454±0.00 2.350±0.44 4.305±0.00 6.256±4.56 1.648±0.48 N/A 0.716±0.00 10.298±7.78 6.003±1.86 5.668±1.10
ENST00000533048 N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.546±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0001 VISTA 11:62298635-62900076

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000346 IDA transcription export complex
GO:0003723 IEA RNA binding
GO:0003729 IEA mRNA binding
GO:0005487 IEA nucleocytoplasmic transporter activity
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005643 IEA nuclear pore
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006405 IEA RNA export from nucleus
GO:0006406 IDA:IEA mRNA export from nucleus
GO:0006810 IEA transport
GO:0010467 TAS gene expression
GO:0016032 IEA viral process
GO:0016607 IDA nuclear speck
GO:0016973 IEA poly(A)+ mRNA export from nucleus
GO:0042405 IEA nuclear inclusion body
GO:0044822 IDA poly(A) RNA binding
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055076 nxf1 nuclear RNA export factor 1 protein_coding Danio_rerio
ENSDARG00000086017 NXF1 (2 of 4) protein_coding Danio_rerio
ENSDARG00000089034 NXF1 (3 of 4) protein_coding Danio_rerio
ENSDARG00000095404 NXF1 (4 of 4) protein_coding Danio_rerio
ENSMUSG00000010097 Nxf1 nuclear RNA export factor 1 protein_coding Mus_musculus

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