C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear RNA export factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000010241 Nxf1-001 ENSMUSG00000010097 10090 + 19:8757073-8770922 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000010241
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000010241 51.530±0.58 41.765±1.67 22.990±0.00 8.345±0.00 9.700±0.00 9.687±0.77 25.770±25.06 6.353±1.28 31.729±7.23 29.795±9.91 26.610±10.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0002 VISTA 19:8644197-9245760

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000346 ISS transcription export complex
GO:0003723 IDA RNA binding
GO:0003729 IDA mRNA binding
GO:0005487 IDA nucleocytoplasmic transporter activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005643 IDA nuclear pore
GO:0005737 IEA cytoplasm
GO:0006405 IDA RNA export from nucleus
GO:0016607 ISS nuclear speck
GO:0016973 IPI poly(A)+ mRNA export from nucleus
GO:0042405 IDA nuclear inclusion body
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000294172 NXF1-201 protein_coding Homo_sapiens 0 2438
ENST00000525576 NXF1-010 nonsense_mediated_decay Homo_sapiens 0 536
ENST00000527902 NXF1-013 protein_coding Homo_sapiens 0 449
ENST00000530875 NXF1-003 protein_coding Homo_sapiens 0 1886
ENST00000531131 NXF1-004 protein_coding Homo_sapiens 0 747
ENST00000531709 NXF1-006 protein_coding Homo_sapiens 0 1218
ENST00000531872 NXF1-016 retained_intron Homo_sapiens 0 377
ENST00000532297 NXF1-001 protein_coding Homo_sapiens 0 2459
ENST00000533048 NXF1-014 processed_transcript Homo_sapiens 0 795
ENST00000533440 NXF1-015 retained_intron Homo_sapiens 0 398
ENST00000533499 NXF1-007 retained_intron Homo_sapiens 0 403
ENST00000533671 NXF1-012 protein_coding Homo_sapiens 0 566

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