C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 4B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000036744 Rbm4b-001 ENSMUSG00000033760 10090 + 19:4756571-4765940 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036744
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036744 2.516±0.70 1.683±0.29 4.115±0.00 16.546±10.74 2.220±0.61 1.163±0.26 1.326±0.17 3.834±0.53 2.821±0.57 2.817±0.43 0.845±0.00 4.555±0.90 2.511±1.06 20.677±8.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YM CIL_0003YM_0006 CGP 19:4742913-4811612
CIL_0003YM CIL_0003YM_0005 CGP 19:4756543-4793901

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0006417 IDA regulation of translation
GO:0007623 IDA circadian rhythm
GO:0008270 IEA zinc ion binding
GO:0008380 IEA RNA splicing
GO:0010628 IDA positive regulation of gene expression
GO:0032922 IDA circadian regulation of gene expression
GO:0043153 IDA entrainment of circadian clock by photoperiod
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310046 RBM4B-001 protein_coding Homo_sapiens 0 2185
ENST00000310092 RBM4-001 protein_coding Homo_sapiens 0 1020
ENST00000396053 RBM4-008 protein_coding Homo_sapiens 0 616
ENST00000398692 RBM4-010 protein_coding Homo_sapiens 0 610
ENST00000408993 RBM4-002 protein_coding Homo_sapiens 0 1020
ENST00000409406 RBM4-003 protein_coding Homo_sapiens 0 1022
ENST00000412278 RBM14-RBM4-004 protein_coding Homo_sapiens 0 418
ENST00000421355 RBM14-RBM4-003 nonsense_mediated_decay Homo_sapiens 0 1018
ENST00000483858 RBM4-007 protein_coding Homo_sapiens 0 610
ENST00000506523 RBM4-009 protein_coding Homo_sapiens 0 608
ENST00000510173 RBM4-014 protein_coding Homo_sapiens 0 704
ENST00000515838 RBM4-015 processed_transcript Homo_sapiens 0 191
ENST00000521717 RP11-359B20.1-001 processed_pseudogene Homo_sapiens 0 446
ENST00000522128 RP11-44N12.4-001 processed_pseudogene Homo_sapiens 0 1005
ENST00000524637 RBM4B-008 protein_coding Homo_sapiens 0 752
ENST00000525754 RBM4B-002 protein_coding Homo_sapiens 0 2085
ENST00000528039 RBM4-012 processed_transcript Homo_sapiens 0 387
ENST00000528106 RBM4B-005 nonsense_mediated_decay Homo_sapiens 2e-25 119
ENST00000529195 RBM4B-006 processed_transcript Homo_sapiens 0 259
ENST00000530235 RBM4-013 protein_coding Homo_sapiens 0 610
ENST00000531036 RBM4B-003 protein_coding Homo_sapiens 0 767
ENST00000531969 RBM4B-004 protein_coding Homo_sapiens 0 728
ENST00000532968 RBM4-011 protein_coding Homo_sapiens 0 610
ENST00000534198 RBM4B-007 processed_transcript Homo_sapiens 0 206
ENST00000578778 RBM4-019 protein_coding Homo_sapiens 0 608

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