C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 4B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182200 Rbm4b-002 ENSMUSG00000033760 10090 + 19:4756581-4764130 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastLiverOvaryENSMUST00000182200
Transcript ID Adipose Adrenal Breast Liver Ovary
ENSMUST00000182200 0.525±0.00 1.400±0.03 2.040±0.00 0.655±0.00 1.873±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YM CIL_0003YM_0006 CGP 19:4742913-4811612
CIL_0003YM CIL_0003YM_0005 CGP 19:4756543-4793901

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005575 ND cellular_component
GO:0010628 IDA positive regulation of gene expression

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310046 RBM4B-001 protein_coding Homo_sapiens 0 808
ENST00000310092 RBM4-001 protein_coding Homo_sapiens 0 610
ENST00000396053 RBM4-008 protein_coding Homo_sapiens 0 610
ENST00000398692 RBM4-010 protein_coding Homo_sapiens 0 614
ENST00000408993 RBM4-002 protein_coding Homo_sapiens 0 610
ENST00000409406 RBM4-003 protein_coding Homo_sapiens 0 612
ENST00000412278 RBM14-RBM4-004 protein_coding Homo_sapiens 0 412
ENST00000421355 RBM14-RBM4-003 nonsense_mediated_decay Homo_sapiens 0 612
ENST00000483858 RBM4-007 protein_coding Homo_sapiens 0 619
ENST00000506523 RBM4-009 protein_coding Homo_sapiens 0 608
ENST00000510173 RBM4-014 protein_coding Homo_sapiens 0 610
ENST00000515838 RBM4-015 processed_transcript Homo_sapiens 0 191
ENST00000521717 RP11-359B20.1-001 processed_pseudogene Homo_sapiens 0 446
ENST00000522128 RP11-44N12.4-001 processed_pseudogene Homo_sapiens 0 494
ENST00000524637 RBM4B-008 protein_coding Homo_sapiens 0 752
ENST00000525754 RBM4B-002 protein_coding Homo_sapiens 0 808
ENST00000528039 RBM4-012 processed_transcript Homo_sapiens 0 390
ENST00000528106 RBM4B-005 nonsense_mediated_decay Homo_sapiens 5e-26 121
ENST00000529195 RBM4B-006 processed_transcript Homo_sapiens 0 261
ENST00000530235 RBM4-013 protein_coding Homo_sapiens 0 614
ENST00000531036 RBM4B-003 protein_coding Homo_sapiens 0 815
ENST00000531969 RBM4B-004 protein_coding Homo_sapiens 0 730
ENST00000532968 RBM4-011 protein_coding Homo_sapiens 0 619
ENST00000578778 RBM4-019 protein_coding Homo_sapiens 0 608

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