C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cyclin-dependent kinase inhibitor 2A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000530628 CDKN2A-013 ENSG00000147889 9606 - 9:21968001-21994411 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YE CIL_0007YE_0001 VISTA 9:21773412-22380489
CIL_0007U7 CIL_0007U7_0001 VISTA 9:21778886-22382106
CIL_0007YH CIL_0007YH_0001 VISTA 9:21779916-22382548
CIL_0007YG CIL_0007YG_0001 VISTA 9:21783894-22389830
CIL_0007U8 CIL_0007U8_0001 VISTA 9:21787553-22389799
CIL_00095D CIL_00095D_0001 VISTA 9:21788649-22389830
CIL_000945 CIL_000945_0001 VISTA 9:21789705-22397955
CIL_0008WE CIL_0008WE_0001 VISTA 9:21797850-22401302
CIL_0007YC CIL_0007YC_0001 VISTA 9:21801286-22408086
CIL_00099P CIL_00099P_0001 VISTA 9:21802665-22404754
CIL_0008P9 CIL_0008P9_0001 VISTA 9:21802671-22404650
CIL_00099O CIL_00099O_0001 VISTA 9:21806995-22409801
CIL_0008TL CIL_0008TL_0001 VISTA 9:21807568-22413901
CIL_00094Y CIL_00094Y_0001 VISTA 9:21816988-22419575
CIL_0008SY CIL_0008SY_0001 VISTA 9:21818504-22425326
CIL_0008T0 CIL_0008T0_0001 VISTA 9:21825013-22425357
CIL_00085X CIL_00085X_0001 VISTA 9:21825358-22430491
CIL_00094Z CIL_00094Z_0001 VISTA 9:21827678-22430449
CIL_0008GG CIL_0008GG_0001 VISTA 9:21841068-22443944

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000209 IDA protein polyubiquitination
GO:0002039 IPI p53 binding
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005730 IDA nucleolus
GO:0005739 IEA mitochondrion
GO:0006351 IEA transcription, DNA-templated
GO:0006364 IEA rRNA processing
GO:0006469 IMP negative regulation of protein kinase activity
GO:0006919 IMP activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0007050 IMP cell cycle arrest
GO:0008134 IPI transcription factor binding
GO:0008285 IDA negative regulation of cell proliferation
GO:0008637 IMP apoptotic mitochondrial changes
GO:0010389 IMP regulation of G2/M transition of mitotic cell cycle
GO:0016604 IDA nuclear body
GO:0030889 ISS negative regulation of B cell proliferation
GO:0031647 ISS regulation of protein stability
GO:0031648 IDA protein destabilization
GO:0033088 ISS negative regulation of immature T cell proliferation in thymus
GO:0033235 IMP positive regulation of protein sumoylation
GO:0043234 IDA protein complex
GO:0043517 IDA positive regulation of DNA damage response, signal transduction by p53 class mediator
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046825 IMP regulation of protein export from nucleus
GO:0048103 ISS somatic stem cell division
GO:0050821 IDA protein stabilization
GO:0051444 ISS negative regulation of ubiquitin-protein transferase activity
GO:0055105 ISS ubiquitin-protein transferase inhibitor activity
GO:0070534 IDA protein K63-linked ubiquitination
GO:0071158 IDA positive regulation of cell cycle arrest
GO:0090398 IMP cellular senescence
GO:0097371 IPI MDM2/MDM4 family protein binding
GO:1902510 IMP regulation of apoptotic DNA fragmentation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107131 Cdkn2a-002 protein_coding Mus_musculus 1e-36 158
ENSMUST00000060501 Cdkn2a-001 protein_coding Mus_musculus 5e-35 152

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