C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GATA binding protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000532059 GATA4-005 ENSG00000136574 9606 + 8:11708233-11758522 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonENST00000532059
Transcript ID Breast Colon
ENST00000532059 0.077±0.00 0.344±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Y4 CIL_0008Y4_0001 VISTA 8:11271783-11873892
CIL_000919 CIL_000919_0001 VISTA 8:11446673-12047186
CIL_0007PQ CIL_0007PQ_0001 VISTA 8:11649159-12249913

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001076 IDA RNA polymerase II transcription factor binding transcription factor activity
GO:0001947 ISS heart looping
GO:0003197 ISS endocardial cushion development
GO:0003208 TAS cardiac ventricle morphogenesis
GO:0003215 ISS cardiac right ventricle morphogenesis
GO:0003281 ISS ventricular septum development
GO:0003289 ISS atrial septum primum morphogenesis
GO:0003290 IMP atrial septum secundum morphogenesis
GO:0003677 ISS:IEA DNA binding
GO:0003700 IDA:IEA sequence-specific DNA binding transcription factor activity
GO:0003713 IDA transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 ISS:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006355 ISS:IEA regulation of transcription, DNA-templated
GO:0006366 ISS transcription from RNA polymerase II promoter
GO:0007267 ISS cell-cell signaling
GO:0007492 TAS endoderm development
GO:0007596 TAS blood coagulation
GO:0008134 IPI transcription factor binding
GO:0008270 IEA zinc ion binding
GO:0008584 IEP male gonad development
GO:0010575 ISS positive regulation vascular endothelial growth factor production
GO:0033613 ISS activating transcription factor binding
GO:0035054 ISS embryonic heart tube anterior/posterior pattern specification
GO:0042493 IMP response to drug
GO:0043565 ISS:IEA sequence-specific DNA binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045766 ISS positive regulation of angiogenesis
GO:0045893 ISS:IEA positive regulation of transcription, DNA-templated
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0048617 ISS embryonic foregut morphogenesis
GO:0051891 ISS positive regulation of cardioblast differentiation
GO:0060413 IMP atrial septum morphogenesis
GO:0060575 IDA intestinal epithelial cell differentiation
GO:0070410 IPI co-SMAD binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000067417 Gata4-002 protein_coding Mus_musculus 0 1576
ENSMUST00000118022 Gata4-001 protein_coding Mus_musculus 0 1557
ENSMUST00000121312 Gata4-003 protein_coding Mus_musculus 0 872

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