C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: excision repair cross-complementation group 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000535557 ERCC5-201 ENSG00000134899 9606 + 13:102845841-102858937 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartENST00000535557
Transcript ID Heart
ENST00000535557 1.810±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000WF CIL_0000WF_0001 CGP 13:102799049-102872398

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000405 IDA bubble DNA binding
GO:0000718 TAS nucleotide-excision repair, DNA damage removal
GO:0000737 IDA DNA catabolic process, endonucleolytic
GO:0003690 IDA double-stranded DNA binding
GO:0003697 IDA single-stranded DNA binding
GO:0004518 IEA nuclease activity
GO:0004519 TAS endonuclease activity
GO:0004520 IDA endodeoxyribonuclease activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005662 IDA DNA replication factor A complex
GO:0005675 IDA holo TFIIH complex
GO:0006281 TAS:IEA DNA repair
GO:0006283 IMP transcription-coupled nucleotide-excision repair
GO:0006289 TAS nucleotide-excision repair
GO:0006295 IMP nucleotide-excision repair, DNA incision, 3'-to lesion
GO:0009411 IMP response to UV
GO:0009650 IGI UV protection
GO:0010225 IMP response to UV-C
GO:0016591 IDA DNA-directed RNA polymerase II, holoenzyme
GO:0042803 IPI protein homodimerization activity
GO:0043066 IMP negative regulation of apoptotic process
GO:0045111 IDA intermediate filament cytoskeleton
GO:0046872 IEA metal ion binding
GO:0047485 IPI protein N-terminus binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027214 Ercc5-001 protein_coding Mus_musculus 0 725
ENSMUST00000131177 Ercc5-002 retained_intron Mus_musculus 0 725
ENSMUST00000139510 Ercc5-005 processed_transcript Mus_musculus 0 501
ENSMUST00000137380 Ercc5-003 retained_intron Mus_musculus 0 370
ENSMUST00000155862 Ercc5-004 retained_intron Mus_musculus 6e-35 152

Loading