C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coronin 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000537233 CORO7-004 ENSG00000262246 9606 - 16:4354601-4416629 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyENST00000537233
Transcript ID Adipose Brain Breast Colon Kidney
ENST00000537233 2.047±0.00 1.289±0.00 2.523±0.00 2.867±0.00 5.354±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00009U CIL_00009U_0001 CGP 16:4314761-4355607
CIL_00009Y CIL_00009Y_0001 CGP 16:4331549-4420494
CIL_00009L CIL_00009L_0001 CGP 16:4354542-4425705

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IDA actin binding
GO:0005515 IPI:IEA protein binding
GO:0005794 ISS Golgi apparatus
GO:0005802 IDA trans-Golgi network
GO:0006895 IMP Golgi to endosome transport
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0016021 ISS integral component of membrane
GO:0030041 IMP actin filament polymerization
GO:0031410 IEA cytoplasmic vesicle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038552 Coro7-001 protein_coding Mus_musculus 0 2189
ENSMUST00000135823 Coro7-002 nonsense_mediated_decay Mus_musculus 0 1415
ENSMUST00000090480 Coro7-003 protein_coding Mus_musculus 0 466
ENSMUST00000123031 Coro7-004 retained_intron Mus_musculus 0 294
ENSMUST00000127850 Coro7-012 retained_intron Mus_musculus 0 193

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