C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: carnitine palmitoyltransferase 1A (liver)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000539743 CPT1A-002 ENSG00000110090 9606 - 11:68757613-68815503 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000539743
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000539743 7.076±0.00 2.378±0.48 11.842±0.00 13.508±0.00 1.789±0.00 6.047±0.00 2.221±0.00 6.037±0.00 1.446±0.00 10.152±2.61 12.955±0.00 4.641±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001676 IDA long-chain fatty acid metabolic process
GO:0004095 IDA carnitine O-palmitoyltransferase activity
GO:0005739 IDA mitochondrion
GO:0005741 TAS mitochondrial outer membrane
GO:0006635 IEA fatty acid beta-oxidation
GO:0006853 TAS carnitine shuttle
GO:0009437 IDA carnitine metabolic process
GO:0016020 IDA membrane
GO:0016746 IEA transferase activity, transferring acyl groups
GO:0030855 IEP epithelial cell differentiation
GO:0031307 ISS integral component of mitochondrial outer membrane
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109313 Cpt1b-001 protein_coding Mus_musculus 0 211
ENSMUST00000052315 Chkb-002 retained_intron Mus_musculus 5e-19 100
ENSMUST00000165419 Cpt1b-003 retained_intron Mus_musculus 0.0000000000002 82

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