C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: carnitine palmitoyltransferase 1b, muscle
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109313 Cpt1b-001 ENSMUSG00000078937 10090 - 15:89416405-89425863 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverLungMusclePlacentaTestisENSMUST00000109313
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Lung Muscle Placenta Testis
ENSMUST00000109313 11.735±4.79 21.271±8.44 3.537±0.26 29.298±24.89 199.626±17.91 21.927±3.12 7.299±7.11 8.263±2.43 113.534±8.38 3.618±0.66 82.774±28.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00028I CIL_00028I_0002 CGP 15:89390174-89425863
CIL_0002HR CIL_0002HR_0002 CGP 15:89416405-89429908

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004095 TAS carnitine O-palmitoyltransferase activity
GO:0005515 IEA protein binding
GO:0005739 IDA mitochondrion
GO:0005741 TAS mitochondrial outer membrane
GO:0006635 IEA fatty acid beta-oxidation
GO:0008152 IEA metabolic process
GO:0015909 TAS long-chain fatty acid transport
GO:0016021 IEA integral component of membrane
GO:0043231 IEA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265641 CPT1A-006 protein_coding Homo_sapiens 0 211
ENST00000312108 CPT1B-004 protein_coding Homo_sapiens 0 2495
ENST00000360719 CPT1B-201 protein_coding Homo_sapiens 0 2466
ENST00000376618 CPT1A-201 protein_coding Homo_sapiens 0 211
ENST00000395650 CPT1B-001 protein_coding Homo_sapiens 0 2619
ENST00000405237 CPT1B-005 protein_coding Homo_sapiens 0 2479
ENST00000417176 CPT1B-008 protein_coding Homo_sapiens 0 444
ENST00000423069 CPT1B-020 nonsense_mediated_decay Homo_sapiens 0 412
ENST00000452668 CHKB-CPT1B-002 processed_transcript Homo_sapiens 2e-32 143
ENST00000453634 CHKB-CPT1B-001 nonsense_mediated_decay Homo_sapiens 0 1892
ENST00000457250 CPT1B-202 protein_coding Homo_sapiens 0 1851
ENST00000460853 CPT1B-007 retained_intron Homo_sapiens 0 394
ENST00000461117 CPT1B-009 retained_intron Homo_sapiens 0 457
ENST00000475238 CPT1B-013 retained_intron Homo_sapiens 0 342
ENST00000476790 CPT1B-010 retained_intron Homo_sapiens 0 355
ENST00000479886 CPT1B-011 retained_intron Homo_sapiens 5.00264e-43 178
ENST00000492556 CHKB-CPT1B-003 retained_intron Homo_sapiens 0 2527
ENST00000497224 CPT1B-014 retained_intron Homo_sapiens 0 399
ENST00000538994 CPT1A-004 protein_coding Homo_sapiens 1e-19 100
ENST00000539743 CPT1A-002 protein_coding Homo_sapiens 0 211
ENST00000540367 CPT1A-001 protein_coding Homo_sapiens 0 211

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