C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000542207 RNF10-028 ENSG00000022840 9606 + 12:120554771-120563373 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartKidneyLiverLungOvaryENST00000542207
Transcript ID Bladder Breast Colon Heart Kidney Liver Lung Ovary
ENST00000542207 21.003±0.00 19.632±0.00 21.073±0.00 10.326±0.00 19.364±0.00 23.065±0.00 13.729±0.00 12.921±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CQ CIL_0009CQ_0001 VISTA 12:119991644-120595694
CIL_0007ZA CIL_0007ZA_0001 VISTA 12:120240385-120840841
CIL_00075W CIL_00075W_0002 CGP 12:120533480-120581398

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0008270 IEA zinc ion binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000139853 Rnf10-009 nonsense_mediated_decay Mus_musculus 0 713
ENSMUST00000112096 Rnf10-001 protein_coding Mus_musculus 0 713
ENSMUST00000040555 Rnf10-003 protein_coding Mus_musculus 0 713
ENSMUST00000112097 Rnf10-002 protein_coding Mus_musculus 0 713
ENSMUST00000133276 Rnf10-006 retained_intron Mus_musculus 0 305
ENSMUST00000151085 Rnf10-005 processed_transcript Mus_musculus 0 278

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