C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein kinase, AMP-activated, beta 1 non-catalytic subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000545870 PRKAB1-008 ENSG00000111725 9606 + 12:119673810-119680001 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastKidneyLiverMuscleOvaryENST00000545870
Transcript ID Breast Kidney Liver Muscle Ovary
ENST00000545870 4.122±0.00 1.459±0.00 1.611±0.00 0.884±0.00 5.415±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007G8 CIL_0007G8_0002 CGP 12:119593459-119681630

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111999 Prkab1-002 protein_coding Mus_musculus 0 505
ENSMUST00000031486 Prkab1-001 protein_coding Mus_musculus 0 505
ENSMUST00000147343 Prkab1-005 retained_intron Mus_musculus 0 440
ENSMUST00000141018 Prkab1-007 retained_intron Mus_musculus 0 335
ENSMUST00000130924 Prkab2-003 nonsense_mediated_decay Mus_musculus 1e-39 167
ENSMUST00000045743 Prkab2-001 protein_coding Mus_musculus 1e-39 167
ENSMUST00000143927 Prkab2-002 nonsense_mediated_decay Mus_musculus 2e-33 147

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