C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L41
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000546591 RPL41-002 ENSG00000229117 9606 + 12:56116586-56117943 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartLiverLungMuscleOvaryPlacentaTestisENST00000546591
Transcript ID Bladder Brain Breast Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000546591 13.390±0.00 56.791±44.18 31.464±0.00 11.592±1.40 27.509±0.00 29.187±0.00 106.353±0.00 202.244±91.00 142.593±62.40 27.141±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 NAS:IEA structural constituent of ribosome
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006412 NAS:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000177163 Rpl41-002 protein_coding Mus_musculus 3e-37 159
ENSMUST00000073238 Gm10076-201 protein_coding Mus_musculus 3e-31 139
ENSMUST00000176010 Rpl41-001 protein_coding Mus_musculus 4e-30 135
ENSMUST00000176683 Rpl41-003 protein_coding Mus_musculus 4e-30 135
ENSMUST00000086236 Gm10180-201 processed_pseudogene Mus_musculus 3e-26 122
ENSMUST00000179668 Gm10736-201 processed_pseudogene Mus_musculus 3e-26 122
ENSMUST00000178135 Gm3699-201 processed_pseudogene Mus_musculus 3e-26 122
ENSMUST00000176184 Rpl41-004 retained_intron Mus_musculus 3e-22 110
ENSMUST00000177513 Rpl41-006 retained_intron Mus_musculus 3e-22 110
ENSMUST00000176906 Rpl41-007 protein_coding Mus_musculus 0.0000000000002 81

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