C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: collagen, type II, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000546974 COL2A1-009 ENSG00000139219 9606 - 12:47975353-47977445 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonPlacentaENST00000546974
Transcript ID Colon Placenta
ENST00000546974 0.099±0.00 0.537±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YL CIL_0005YL_0001 CGP 12:47963569-48004486
CIL_00079B CIL_00079B_0001 CGP 12:47972965-48106308

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000088355 Col2a1-002 protein_coding Mus_musculus 0 846
ENSMUST00000023123 Col2a1-001 protein_coding Mus_musculus 0 846

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