C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005YL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000134291-ENSG00000139219 CGP 9606 12:47963569-48004486
GeneTranscriptPositionBiotype
ENSG00000134291 (TMEM106C)
transmembrane protein 106C 		ENST00000256686 (TMEM106C-002) 47963584-47968849 protein_coding
ENST00000429772 (TMEM106C-001) 47963620-47968878 protein_coding
ENST00000449758 (TMEM106C-003) 47963635-47968849 protein_coding
ENST00000546749 (TMEM106C-010) 47963607-47966726 protein_coding
ENST00000547136 (TMEM106C-017) 47965653-47966450 retained_intron
ENST00000547682 (TMEM106C-019) 47965928-47968488 protein_coding
ENST00000548153 (TMEM106C-006) 47963596-47965522 retained_intron
ENST00000548355 (TMEM106C-020) 47964213-47968336 nonsense_mediated_decay
ENST00000548640 (TMEM106C-015) 47963858-47968187 protein_coding
ENST00000548965 (TMEM106C-021) 47964241-47968211 protein_coding
ENST00000549287 (TMEM106C-018) 47966556-47968488 retained_intron
ENST00000549288 (TMEM106C-008) 47963596-47968200 protein_coding
ENST00000550146 (TMEM106C-007) 47963569-47968263 nonsense_mediated_decay
ENST00000550161 (TMEM106C-013) 47963635-47967065 protein_coding
ENST00000550552 (TMEM106C-012) 47963609-47968256 protein_coding
ENST00000551305 (TMEM106C-005) 47963584-47968171 retained_intron
ENST00000551705 (TMEM106C-014) 47963638-47965665 retained_intron
ENST00000552187 (TMEM106C-009) 47963601-47964765 retained_intron
ENST00000552546 (TMEM106C-011) 47963607-47968376 protein_coding
ENST00000552561 (TMEM106C-004) 47963605-47968229 protein_coding
ENST00000553217 (TMEM106C-016) 47964209-47968434 nonsense_mediated_decay
ENST00000615597 (TMEM106C-022) 47965964-47967192 protein_coding
ENSG00000139219 (COL2A1)
collagen, type II, alpha 1 		ENST00000337299 (COL2A1-008) 47973407-48004321 protein_coding
ENST00000380518 (COL2A1-001) 47972965-48004486 protein_coding
ENST00000465743 (COL2A1-005) 48002622-48004362 processed_transcript
ENST00000466884 (COL2A1-004) 47998169-47998859 processed_transcript
ENST00000474996 (COL2A1-002) 47997615-48004449 processed_transcript
ENST00000483376 (COL2A1-006) 47981343-47983855 retained_intron
ENST00000490609 (COL2A1-003) 47999697-48004486 retained_intron
ENST00000493991 (COL2A1-007) 47973201-47988471 processed_transcript
ENST00000546974 (COL2A1-009) 47975353-47977445 retained_intron
CIL_0005YL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000052369-ENSMUSG00000022483 CGP 10090 15:97964229-98004695
GeneTranscriptPositionBiotype
ENSMUSG00000022483 (Col2a1)
collagen, type II, alpha 1 		ENSMUST00000023123 (Col2a1-001) 97975602-98004695 protein_coding
ENSMUST00000088355 (Col2a1-002) 97975602-98004657 protein_coding
ENSMUST00000127879 (Col2a1-004) 97998371-98001887 processed_transcript
ENSMUST00000128547 (Col2a1-007) 97988111-97990476 processed_transcript
ENSMUST00000131560 (Col2a1-009) 97998578-98004635 protein_coding
ENSMUST00000131910 (Col2a1-008) 97986309-97988921 retained_intron
ENSMUST00000133488 (Col2a1-005) 97995019-97999693 processed_transcript
ENSMUST00000139246 (Col2a1-006) 97994868-97999465 retained_intron
ENSMUST00000140064 (Col2a1-003) 98000243-98004657 retained_intron
ENSMUSG00000052369 (Tmem106c)
transmembrane protein 106C 		ENSMUST00000064200 (Tmem106c-201) 97964229-97970286 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005YL_0001ENSG00000134291ENST00000256686ENST00000429772ENST00000449758ENST00000546749ENST00000547682ENST00000548355ENST00000548640ENST00000549287ENST00000549288ENST00000550146ENST00000550552ENST00000551305ENST00000552546ENST00000552561ENST00000553217ENSG00000139219ENST00000337299ENST00000380518ENST00000474996ENST00000490609ENST00000493991ENST00000546974CIL_0005YL_0002ENSMUSG00000022483ENSMUST00000023123ENSMUST00000088355ENSMUST00000128547ENSMUST00000131560ENSMUST00000131910ENSMUST00000133488ENSMUST00000139246ENSMUSG00000052369ENSMUST00000064200
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000134291 ENST00000256686 1.093±0.00 5.678±0.00 N/A 1.531±0.00 N/A N/A N/A N/A 2.108±1.59 3.954±2.92 1.040±0.00 15.540±2.76 14.471±4.68 7.781±1.02
ENST00000429772 N/A N/A N/A N/A N/A 4.841±0.00 N/A 6.973±0.00 N/A N/A N/A 13.287±0.00 5.335±1.34 9.335±0.84
ENST00000449758 2.751±0.00 N/A N/A 2.444±0.00 N/A N/A 5.364±0.00 4.730±0.00 N/A N/A N/A N/A 9.317±0.00 N/A
ENST00000546749 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.062±0.00 N/A N/A N/A N/A
ENST00000547136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547682 N/A N/A 3.033±0.00 3.775±0.00 8.397±0.00 10.421±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548153 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548355 3.071±0.00 N/A N/A 5.904±0.00 6.606±0.00 14.571±0.00 N/A 12.947±0.00 N/A 4.593±0.00 N/A N/A N/A 18.472±0.00
ENST00000548640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.355±0.00 N/A N/A N/A
ENST00000548965 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549287 N/A N/A N/A N/A 7.276±0.00 N/A 1.445±0.00 N/A 1.544±0.00 N/A N/A N/A N/A N/A
ENST00000549288 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.120±0.00 N/A N/A N/A
ENST00000550146 N/A N/A N/A N/A N/A N/A N/A N/A 1.792±0.00 N/A N/A 5.840±0.00 N/A N/A
ENST00000550161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550552 N/A N/A 4.266±0.00 4.493±0.00 4.748±0.00 10.401±0.00 4.800±3.65 2.257±0.00 N/A 1.967±0.00 1.967±1.60 N/A N/A N/A
ENST00000551305 N/A N/A N/A N/A N/A N/A N/A N/A 0.503±0.00 N/A N/A N/A N/A N/A
ENST00000551705 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552187 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552546 N/A N/A 1.231±0.00 5.615±0.00 6.067±0.00 6.225±0.00 N/A N/A 1.188±0.00 N/A 0.981±0.00 10.059±0.00 N/A N/A
ENST00000552561 N/A N/A N/A N/A N/A 7.423±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553217 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.622±0.00 N/A N/A N/A
ENST00000615597 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000139219 ENST00000337299 N/A N/A N/A 0.029±0.00 N/A N/A N/A N/A N/A N/A N/A 0.015±0.00 N/A 0.245±0.00
ENST00000380518 N/A N/A N/A N/A 0.102±0.00 N/A N/A N/A N/A 0.088±0.00 N/A 0.550±0.22 0.279±0.06 0.385±0.27
ENST00000465743 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466884 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474996 N/A N/A N/A 0.072±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490609 N/A N/A N/A N/A N/A N/A N/A N/A 0.404±0.00 N/A N/A 0.225±0.00 N/A N/A
ENST00000493991 N/A 0.015±0.00 N/A 0.075±0.01 0.029±0.00 0.037±0.00 0.007±0.00 N/A 0.036±0.00 N/A 0.032±0.00 N/A 0.105±0.04 N/A
ENST00000546974 N/A N/A N/A N/A N/A 0.099±0.00 N/A N/A N/A N/A N/A N/A 0.537±0.22 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022483 ENSMUST00000023123 N/A N/A N/A 9.659±3.13 0.032±0.00 N/A 0.021±0.00 N/A 0.097±0.05 N/A 0.114±0.00 N/A 5.177±1.42 N/A
ENSMUST00000088355 0.010±0.01 0.015±0.01 0.010±0.00 N/A 0.017±0.01 0.015±0.00 0.114±0.11 0.019±0.00 0.077±0.00 0.106±0.09 0.112±0.03 0.029±0.01 0.711±0.85 N/A
ENSMUST00000127879 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128547 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.290±0.00 N/A N/A N/A
ENSMUST00000131560 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.457±0.00 N/A
ENSMUST00000131910 0.050±0.00 0.260±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.083±0.00 N/A
ENSMUST00000133488 N/A N/A N/A N/A N/A 0.103±0.00 N/A N/A N/A 0.061±0.01 N/A N/A N/A N/A
ENSMUST00000139246 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.310±0.00 N/A N/A N/A
ENSMUST00000140064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000052369 ENSMUST00000064200 13.265±7.20 15.081±3.95 17.789±1.32 10.018±4.75 14.424±9.00 9.638±2.04 5.572±1.35 13.052±6.25 7.781±2.68 12.007±1.43 1.733±0.49 13.341±7.50 2.110±0.94 15.914±7.50

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