C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: caprin family member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000548676 CAPRIN2-017 ENSG00000110888 9606 - 12:30709553-30751124 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverOvaryPlacentaTestisENST00000548676
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Ovary Placenta Testis
ENST00000548676 0.610±0.00 1.057±0.00 1.142±0.00 2.222±0.00 0.570±0.00 1.865±0.00 0.882±0.05 2.494±1.40 0.532±0.18 3.711±0.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006HS CIL_0006HS_0001 CGP 12:30628988-30754951

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003824 IEA catalytic activity
GO:0044237 IEA cellular metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111569 Caprin2-001 protein_coding Mus_musculus 0 2362
ENSMUST00000072324 Caprin2-003 protein_coding Mus_musculus 0 1905
ENSMUST00000127941 Caprin2-008 processed_transcript Mus_musculus 0 518
ENSMUST00000151640 Caprin2-007 processed_transcript Mus_musculus 0 372
ENSMUST00000139914 Caprin2-006 protein_coding Mus_musculus 0 250
ENSMUST00000154971 Caprin2-005 processed_transcript Mus_musculus 0 198

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