C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin VA (heavy chain 12, myoxin)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000553916 MYO5A-007 ENSG00000197535 9606 - 15:52313304-52528841 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000553916
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000553916 1.184±0.00 5.024±0.00 1.326±0.69 0.663±0.19 0.413±0.25 0.638±0.00 1.355±0.00 1.108±0.74 1.422±0.00 0.464±0.22 0.607±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003774 IEA motor activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008152 IEA metabolic process
GO:0016459 IEA myosin complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000123128 Myo5a-001 protein_coding Mus_musculus 0 7483
ENSMUST00000136731 Myo5a-009 protein_coding Mus_musculus 0 5535
ENSMUST00000155282 Myo5a-003 protein_coding Mus_musculus 0 5251
ENSMUST00000123531 Myo5a-010 nonsense_mediated_decay Mus_musculus 0 3703
ENSMUST00000136604 Myo5a-002 processed_transcript Mus_musculus 0 1827
ENSMUST00000148144 Myo5a-011 protein_coding Mus_musculus 0 1735
ENSDART00000088037 myo5aa-201 protein_coding Danio_rerio 0 1125
ENSDART00000133618 myo5aa-001 protein_coding Danio_rerio 0 1107
ENSDART00000148541 myo5aa-003 protein_coding Danio_rerio 0 1107
ENSMUST00000136871 Myo5a-006 retained_intron Mus_musculus 0 859
ENSMUST00000149032 Myo5a-012 retained_intron Mus_musculus 0 675
ENSMUST00000142181 Myo5a-008 retained_intron Mus_musculus 0 652
ENSMUST00000129281 Myo5a-007 protein_coding Mus_musculus 0 411
ENSMUST00000153404 Myo5a-004 retained_intron Mus_musculus 0 289
ENSMUST00000130384 Myo5a-013 protein_coding Mus_musculus 0 289

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