C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA pseudouridylate synthase domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000559271 RPUSD2-004 ENSG00000166133 9606 + 15:40569332-40574358 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000559271
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000559271 0.919±0.00 4.093±0.00 0.417±0.00 1.763±0.42 1.671±0.74 1.416±0.00 1.569±0.00 4.227±0.00 1.896±1.52 0.561±0.01 3.649±0.00 3.990±1.43 2.824±0.49 3.082±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070E CIL_00070E_0001 CGP 15:40528683-40574943
CIL_00070F CIL_00070F_0001 CGP 15:40569300-40664342

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001522 IEA pseudouridine synthesis
GO:0003723 IEA RNA binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0009451 IEA RNA modification
GO:0009982 IEA pseudouridine synthase activity
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028796 Rpusd2-001 protein_coding Mus_musculus 0 1131

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