C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000564851 RP11-439I14.1-001 ENSG00000260187 9606 + 16:64736788-64737280 transcribed_processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartOvaryPlacentaTestisENST00000564851
Transcript ID Brain Heart Ovary Placenta Testis
ENST00000564851 0.232±0.00 0.025±0.00 0.288±0.00 0.127±0.01 0.180±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008F7 CIL_0008F7_0001 VISTA 16:64317637-64918991

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000175860 Gm6061-001 processed_pseudogene Mus_musculus 0 372
ENSMUST00000120318 Gm13493-001 processed_pseudogene Mus_musculus 0 372
ENSMUST00000077747 Gm9234-201 processed_pseudogene Mus_musculus 0 372
ENSMUST00000132846 Ppia-001 protein_coding Mus_musculus 0 366
ENSMUST00000075723 Gm10123-001 processed_pseudogene Mus_musculus 0 364
ENSMUST00000119389 Gm14046-001 processed_pseudogene Mus_musculus 0 357
ENSMUST00000090749 Ppia-005 processed_transcript Mus_musculus 0 344
ENSMUST00000155824 Ppia-003 retained_intron Mus_musculus 0 344
ENSMUST00000075293 E030024N20Rik-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000117621 Gm13750-001 processed_pseudogene Mus_musculus 0 329
ENSMUST00000178933 Gm5558-201 processed_pseudogene Mus_musculus 0 327
ENSMUST00000137829 Ppia-002 retained_intron Mus_musculus 0 324
ENSMUST00000172723 Gm5967-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000137540 Gclm-003 processed_transcript Mus_musculus 9.94922e-44 180
ENSMUST00000069552 Gm5160-201 protein_coding Mus_musculus 6.00036e-42 174
ENSMUST00000135789 Ppia-004 retained_intron Mus_musculus 1e-33 147
ENSMUST00000188400 RP23-325F17.1-001 processed_pseudogene Mus_musculus 5e-18 95

Loading