C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate-cysteine ligase, modifier subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000137540 Gclm-003 ENSMUSG00000028124 10090 + 3:122245712-122256971 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungOvaryENSMUST00000137540
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Ovary
ENSMUST00000137540 5.307±1.47 48.824±20.07 25.105±11.08 60.288±3.45 45.379±30.86 46.522±17.74 20.892±0.00 23.373±6.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DI CIL_0009DI_0002 VISTA 3:121653542-122254391
CIL_0009DJ CIL_0009DJ_0002 VISTA 3:121747471-122349247
CIL_0009DH CIL_0009DH_0002 VISTA 3:121992915-122594267
CIL_00005U CIL_00005U_0002 CGP 3:122245557-122285269

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355968 PPIA-002 protein_coding Homo_sapiens 0 252
ENST00000358455 PPIAP22-001 processed_pseudogene Homo_sapiens 0 335
ENST00000370238 GCLM-001 protein_coding Homo_sapiens 0 337
ENST00000377951 PPIAP26-001 processed_pseudogene Homo_sapiens 0 254
ENST00000403866 PPIAP9-001 processed_pseudogene Homo_sapiens 0 313
ENST00000405422 PPIAP31-001 processed_pseudogene Homo_sapiens 0 307
ENST00000414949 PPIAP29-001 processed_pseudogene Homo_sapiens 0 294
ENST00000414951 RP11-5P22.1-001 processed_pseudogene Homo_sapiens 0 283
ENST00000415473 PPIAP30-001 processed_pseudogene Homo_sapiens 0 254
ENST00000415933 PPIA-007 nonsense_mediated_decay Homo_sapiens 0 342
ENST00000418291 PPIAP9-001 processed_pseudogene Homo_sapiens 0 313
ENST00000420447 PPIAP9-001 processed_pseudogene Homo_sapiens 0 313
ENST00000423991 RP11-804H8.5-001 processed_pseudogene Homo_sapiens 0 191
ENST00000424692 RP11-728C8.1-001 processed_pseudogene Homo_sapiens 0 237
ENST00000428093 AC017083.2-001 processed_pseudogene Homo_sapiens 0 255
ENST00000428657 AC073069.2-001 processed_pseudogene Homo_sapiens 0 198
ENST00000430535 RP11-316K19.3-001 processed_pseudogene Homo_sapiens 0 200
ENST00000434706 PPIAP13-001 processed_pseudogene Homo_sapiens 0 289
ENST00000440658 PPIAP9-001 processed_pseudogene Homo_sapiens 0 313
ENST00000441944 PPIAP33-001 processed_pseudogene Homo_sapiens 0 294
ENST00000442288 PPIAP9-001 processed_pseudogene Homo_sapiens 0 313
ENST00000443177 RP11-420H19.2-001 processed_pseudogene Homo_sapiens 9.94922e-44 180
ENST00000443254 PPIAP9-001 processed_pseudogene Homo_sapiens 0 318
ENST00000443635 PPIAP9-001 processed_pseudogene Homo_sapiens 0 307
ENST00000447554 PPIAP9-001 processed_pseudogene Homo_sapiens 0 313
ENST00000448870 AC090804.1-001 processed_pseudogene Homo_sapiens 0 305
ENST00000451562 PPIA-006 protein_coding Homo_sapiens 0 342
ENST00000452411 AC091654.7-001 processed_pseudogene Homo_sapiens 0 300
ENST00000453800 PPIAP27-001 processed_pseudogene Homo_sapiens 9e-33 143
ENST00000462183 GCLM-003 processed_transcript Homo_sapiens 0.000000000000001 88
ENST00000462678 RP4-545C24.5-001 processed_pseudogene Homo_sapiens 0 202
ENST00000464473 PPIAP21-001 processed_pseudogene Homo_sapiens 0 257
ENST00000467407 CYP11A1-005 processed_transcript Homo_sapiens 0 298
ENST00000467772 GCLM-002 processed_transcript Homo_sapiens 8e-17 92
ENST00000468812 PPIA-001 protein_coding Homo_sapiens 0 342
ENST00000479021 PPIA-009 nonsense_mediated_decay Homo_sapiens 2e-18 97
ENST00000480603 PPIA-008 processed_transcript Homo_sapiens 0 246
ENST00000481437 PPIA-005 retained_intron Homo_sapiens 0 270
ENST00000483456 RP11-641C17.1-001 processed_pseudogene Homo_sapiens 0 270
ENST00000489459 PPIA-003 protein_coding Homo_sapiens 0 246
ENST00000494484 PPIA-004 retained_intron Homo_sapiens 1.99965e-42 178
ENST00000496953 RP11-641C17.2-001 processed_pseudogene Homo_sapiens 0 268
ENST00000510729 PPIAP11-001 processed_pseudogene Homo_sapiens 0 320
ENST00000520812 RP11-114M5.3-001 processed_pseudogene Homo_sapiens 0 230
ENST00000557282 RP11-481K9.4-001 processed_pseudogene Homo_sapiens 0 267
ENST00000562009 CTD-2311M21.2-002 processed_transcript Homo_sapiens 0 303
ENST00000563335 AC009120.8-001 processed_pseudogene Homo_sapiens 0 270
ENST00000564109 CTD-2311M21.2-003 processed_transcript Homo_sapiens 0 303
ENST00000564851 RP11-439I14.1-001 transcribed_processed_pseudogene Homo_sapiens 9.94922e-44 180
ENST00000567565 RP11-24M17.3-001 processed_pseudogene Homo_sapiens 0 283
ENST00000577627 PPIAP14-001 processed_pseudogene Homo_sapiens 6.00036e-42 174
ENST00000596021 CTB-147C22.3-001 processed_pseudogene Homo_sapiens 0 270
ENST00000615724 GCLM-201 protein_coding Homo_sapiens 0 250
ENST00000619076 GCLM-202 protein_coding Homo_sapiens 0 337
ENST00000620047 PPIA-201 protein_coding Homo_sapiens 0 215

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