C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RPGRIP1-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000568653 RPGRIP1L-002 ENSG00000103494 9606 - 16:53693312-53703847 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaENST00000568653
Transcript ID Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta
ENST00000568653 0.345±0.00 0.597±0.00 0.354±0.00 0.184±0.00 0.092±0.00 0.098±0.00 0.311±0.00 0.103±0.00 0.434±0.00 0.219±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0002 UCNEbase 16:51906374-55391377
CIL_0007PV CIL_0007PV_0001 VISTA 16:53229142-53830543
CIL_0008IZ CIL_0008IZ_0001 VISTA 16:53244122-53845073
CIL_0007S1 CIL_0007S1_0001 VISTA 16:53392404-53993644
CIL_0007S0 CIL_0007S0_0001 VISTA 16:53426386-54027245
CIL_0005OC CIL_0005OC_0001 CGP 16:53491040-53703938
CIL_0007SA CIL_0007SA_0001 VISTA 16:53595301-54195912
CIL_0005OE CIL_0005OE_0001 CGP 16:53597683-54121941

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047783 Rpgrip1l-001 protein_coding Mus_musculus 0 372
ENSMUST00000132757 Rpgrip1l-003 protein_coding Mus_musculus 0 348
ENSMUST00000139113 Rpgrip1l-002 nonsense_mediated_decay Mus_musculus 0 342

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