C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000569208 RP11-467J12.2-001 ENSG00000260258 9606 + 16:52942139-52943005 transcribed_processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartLiverMuscleOvaryENST00000569208
Transcript ID Colon Heart Liver Muscle Ovary
ENST00000569208 0.331±0.00 0.075±0.00 0.072±0.00 0.346±0.00 0.046±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0002 UCNEbase 16:51906374-55391377
CIL_0008U8 CIL_0008U8_0001 VISTA 16:52406202-53010959
CIL_00077Q CIL_00077Q_0001 CGP 16:52438005-53329150
CIL_0009C3 CIL_0009C3_0001 VISTA 16:52653279-53264699

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026989 4833439L19Rik-001 protein_coding Mus_musculus 0 270
ENSMUST00000153065 4833439L19Rik-002 protein_coding Mus_musculus 0 257
ENSMUST00000147318 4833439L19Rik-006 retained_intron Mus_musculus 4.00001e-41 172
ENSMUST00000143144 4833439L19Rik-004 protein_coding Mus_musculus 9.99995e-41 171
ENSMUST00000132136 4833439L19Rik-009 protein_coding Mus_musculus 2e-39 167
ENSMUST00000150938 4833439L19Rik-007 retained_intron Mus_musculus 1e-36 158
ENSMUST00000143173 4833439L19Rik-008 retained_intron Mus_musculus 1e-36 158
ENSMUST00000126295 4833439L19Rik-005 protein_coding Mus_musculus 3e-32 143

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