C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0009C3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm871 VISTA 9606 16:52653279-53264699
GeneTranscriptPositionBiotype
ENSG00000177200 (CHD9)
chromodomain helicase DNA binding protein 9 		ENST00000219084 (CHD9-019) 53235137-53327451 retained_intron
ENST00000398510 (CHD9-020) 53156003-53327451 protein_coding
ENST00000447540 (CHD9-201) 53055033-53327501 protein_coding
ENST00000561869 (CHD9-008) 53055039-53121980 processed_transcript
ENST00000562785 (CHD9-011) 53156006-53157462 protein_coding
ENST00000562791 (CHD9-014) 53209780-53226403 processed_transcript
ENST00000562806 (CHD9-016) 53249901-53254671 retained_intron
ENST00000563410 (CHD9-010) 53131134-53156248 protein_coding
ENST00000564255 (CHD9-006) 53157164-53250175 retained_intron
ENST00000564582 (CHD9-009) 53099180-53122178 processed_transcript
ENST00000564600 (CHD9-017) 53314506-53321563 nonsense_mediated_decay
ENST00000564641 (CHD9-018) 53314867-53324141 nonsense_mediated_decay
ENST00000564845 (CHD9-003) 53130921-53327451 protein_coding
ENST00000565119 (CHD9-015) 53245733-53250649 processed_transcript
ENST00000565442 (CHD9-012) 53208451-53222755 protein_coding
ENST00000565803 (CHD9-004) 53207989-53268127 protein_coding
ENST00000565832 (CHD9-002) 53099160-53222755 protein_coding
ENST00000566029 (CHD9-001) 53055033-53329150 protein_coding
ENST00000569225 (CHD9-005) 53235137-53248163 retained_intron
ENST00000569794 (CHD9-013) 53208032-53209813 processed_transcript
ENST00000615216 (CHD9-202) 53055033-53327501 protein_coding
ENST00000622617 (CHD9-203) 53156543-53324895 protein_coding
ENSG00000234337 (RP11-297L17.6)
 ENST00000567701 (RP11-297L17.6-001) 52655307-52656045 processed_pseudogene
ENSG00000260258 (RP11-467J12.2)
 ENST00000569208 (RP11-467J12.2-001) 52942139-52943005 transcribed_processed_pseudogene
ENST00000602826 (RP11-467J12.2-002) 52942781-52943464 processed_transcript
ENSG00000260326 (RP11-467J12.1)
 ENST00000562636 (RP11-467J12.1-001) 52934813-52935635 processed_pseudogene
ENSG00000260939 (RP11-467J12.3)
 ENST00000564816 (RP11-467J12.3-001) 53010395-53011286 processed_pseudogene
ENSG00000261291 (RP11-295M3.2)
 ENST00000568648 (RP11-295M3.2-001) 53168522-53169450 sense_intronic
ENSG00000261550 (RP11-467J12.4)
 ENST00000562178 (RP11-467J12.4-001) 53035690-53052873 antisense
ENSG00000277639 (RP11-295M3.4)
 ENST00000619363 (RP11-295M3.4-001) 53043066-53044216 lincRNA
ENSG00000279018 (AC007906.1)
 ENST00000624244 (AC007906.1-201) 53207941-53226385 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0009C3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm871 VISTA 10090 8:90438604-91042411
GeneTranscriptPositionBiotype
ENSMUSG00000056608 (Chd9)
chromodomain helicase DNA binding protein 9 		ENSMUST00000048665 (Chd9-201) 90828835-91054508 protein_coding
ENSMUST00000109614 (Chd9-202) 90828835-91054508 protein_coding
ENSMUSG00000074171 (Gm6658)
predicted gene 6658 		ENSMUST00000098517 (Gm6658-201) 90907939-90908415 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0009C3_0001ENSG00000177200ENST00000219084ENST00000398510ENST00000447540ENST00000561869ENST00000562785ENST00000562791ENST00000562806ENST00000563410ENST00000564255ENST00000564582ENST00000564600ENST00000564641ENST00000564845ENST00000565119ENST00000565442ENST00000565803ENST00000565832ENST00000566029ENST00000569225ENST00000569794ENST00000615216ENST00000622617ENSG00000234337ENST00000567701ENSG00000260258ENST00000569208ENST00000602826ENSG00000260326ENST00000562636ENSG00000260939ENST00000564816ENSG00000261291ENST00000568648ENSG00000261550ENST00000562178ENSG00000277639ENST00000619363ENSG00000279018ENST00000624244CIL_0009C3_0002ENSMUSG00000056608ENSMUST00000048665ENSMUST00000109614ENSMUSG00000074171ENSMUST00000098517
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0009C3_0001ENSG00000177200ENST00000219084ENST00000398510ENST00000447540ENST00000564255ENST00000564845ENST00000565832ENST00000566029ENST00000615216ENST00000622617ENSG00000234337ENST00000567701ENSG00000260258ENST00000569208ENST00000602826ENSG00000260326ENST00000562636ENSG00000260939ENST00000564816ENSG00000261291ENST00000568648ENSG00000261550ENST00000562178ENSG00000277639ENST00000619363ENSG00000279018ENST00000624244CIL_0009C3_0002ENSMUSG00000056608ENSMUST00000048665ENSMUST00000109614ENSMUSG00000074171ENSMUST00000098517
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000177200 ENST00000219084 1.701±0.00 1.684±0.00 1.529±0.00 2.511±0.64 2.570±0.71 1.874±0.00 1.414±0.14 2.766±1.69 1.062±0.00 4.573±2.18 1.101±0.54 3.292±1.43 0.593±0.09 1.541±0.40
ENST00000398510 N/A 0.697±0.00 1.513±0.00 1.958±0.00 2.232±0.00 N/A N/A N/A 3.533±0.00 N/A N/A N/A 0.475±0.04 N/A
ENST00000447540 0.963±0.00 N/A N/A 0.742±0.00 0.434±0.00 0.838±0.00 0.794±0.00 N/A N/A N/A N/A 1.311±0.00 N/A N/A
ENST00000561869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562785 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562791 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563410 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564255 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.819±0.00 1.759±0.00 2.016±0.00
ENST00000564582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564600 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564641 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564845 N/A N/A N/A N/A N/A 2.195±0.00 0.652±0.00 0.994±0.00 2.243±0.00 N/A N/A N/A N/A N/A
ENST00000565119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565442 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565803 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565832 N/A N/A 9.277±0.00 25.948±0.00 11.398±0.00 11.726±0.00 7.489±0.00 4.465±0.00 16.697±0.00 N/A N/A N/A N/A N/A
ENST00000566029 0.415±0.00 N/A N/A 0.529±0.00 N/A N/A 0.495±0.00 1.206±0.00 N/A N/A N/A N/A N/A N/A
ENST00000569225 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569794 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615216 N/A N/A 2.079±0.00 N/A 0.566±0.00 1.966±0.00 1.151±0.00 0.827±0.00 2.220±0.00 N/A N/A 0.989±0.55 0.381±0.18 0.763±0.00
ENST00000622617 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.166±0.00 2.118±0.00 3.178±0.00
ENSG00000234337 ENST00000567701 0.038±0.00 0.086±0.00 N/A 0.064±0.00 0.109±0.09 N/A N/A 0.022±0.00 N/A N/A 0.059±0.02 0.028±0.00 0.059±0.00 0.057±0.00
ENSG00000260258 ENST00000569208 N/A N/A N/A N/A N/A 0.331±0.00 0.075±0.00 N/A 0.072±0.00 N/A 0.346±0.00 0.046±0.00 N/A N/A
ENST00000602826 N/A N/A 0.446±0.00 N/A 0.345±0.00 0.185±0.00 N/A N/A 0.387±0.00 0.108±0.00 N/A 0.051±0.00 N/A N/A
ENSG00000260326 ENST00000562636 0.063±0.00 0.022±0.00 N/A 0.074±0.00 0.095±0.00 0.360±0.25 N/A 0.138±0.00 0.215±0.00 N/A 0.019±0.00 0.039±0.01 N/A 0.061±0.00
ENSG00000260939 ENST00000564816 N/A 0.052±0.00 N/A N/A 0.394±0.00 N/A N/A N/A N/A N/A 0.011±0.00 N/A N/A N/A
ENSG00000261291 ENST00000568648 0.220±0.00 0.085±0.00 0.747±0.00 0.043±0.00 0.532±0.41 1.255±0.00 0.080±0.00 0.640±0.56 0.538±0.00 1.878±0.00 N/A 0.306±0.42 N/A 0.058±0.00
ENSG00000261550 ENST00000562178 0.374±0.00 0.115±0.00 N/A 0.131±0.00 0.361±0.00 0.145±0.00 0.036±0.00 0.193±0.00 N/A 0.455±0.00 N/A N/A N/A N/A
ENSG00000277639 ENST00000619363 0.094±0.00 0.205±0.00 1.737±0.00 1.110±0.00 2.651±0.00 0.228±0.06 0.177±0.15 2.017±1.69 0.201±0.00 12.022±10.55 0.165±0.00 3.601±4.46 0.850±0.24 0.763±0.61
ENSG00000279018 ENST00000624244 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.946±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000056608 ENSMUST00000048665 1.975±0.78 0.604±0.13 1.491±0.00 6.207±0.95 2.103±0.62 0.847±0.41 0.906±0.29 0.817±0.25 0.966±0.66 1.497±0.75 0.618±0.18 2.580±0.98 0.453±0.10 0.693±0.37
ENSMUST00000109614 1.482±0.58 2.212±0.52 2.950±0.03 1.582±0.76 1.970±1.00 2.535±0.49 0.973±0.47 1.428±0.31 0.977±0.47 1.823±0.54 0.649±0.20 2.712±1.39 0.885±0.16 0.223±0.04
ENSMUSG00000074171 ENSMUST00000098517 0.327±0.13 0.545±0.20 0.704±0.00 0.833±0.21 1.237±0.92 1.174±0.58 0.214±0.03 0.403±0.18 0.193±0.09 0.457±0.33 N/A 1.286±0.58 N/A 0.678±0.19

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