C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chemokine (C-X-C motif) ligand 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000574412 CXCL16-002 ENSG00000161921 9606 - 17:4734286-4739922 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastKidneyLungOvaryTestisENST00000574412
Transcript ID Breast Kidney Lung Ovary Testis
ENST00000574412 1.552±0.00 1.250±0.00 1.166±0.00 2.855±2.05 21.886±1.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000106 CIL_000106_0001 CGP 17:4710489-4733610
CIL_0001RD CIL_0001RD_0001 CGP 17:4731428-4739922
CIL_0001RE CIL_0001RE_0001 CGP 17:4733526-4746119

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005041 ISS low-density lipoprotein receptor activity
GO:0005044 TAS scavenger receptor activity
GO:0005576 TAS extracellular region
GO:0005615 IDA extracellular space
GO:0005886 IEA plasma membrane
GO:0006898 IEA:NAS receptor-mediated endocytosis
GO:0006935 NAS chemotaxis
GO:0008009 ISS chemokine activity
GO:0016020 TAS membrane
GO:0016021 NAS integral component of membrane
GO:0030307 IEA:IMP positive regulation of cell growth
GO:0030335 IEA:IMP positive regulation of cell migration
GO:0034097 IDA response to cytokine
GO:0034341 IEA:IDA response to interferon-gamma
GO:0034612 IEA:IDA response to tumor necrosis factor
GO:0048247 IEA lymphocyte chemotaxis

Homologs

No Homologs available.

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