C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif containing 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000577886 TRIM16-025 ENSG00000221926 9606 - 17:15627960-15642964 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyLiverOvaryPlacentaTestisENST00000577886
Transcript ID Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENST00000577886 3.064±0.00 1.550±0.00 0.945±0.00 1.629±0.00 0.380±0.00 5.730±1.65 9.815±0.47 4.062±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QF CIL_0008QF_0001 VISTA 17:15144744-15748248

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0016605 IDA PML body
GO:0019966 IPI interleukin-1 binding
GO:0032089 IPI NACHT domain binding
GO:0032526 IEP response to retinoic acid
GO:0043966 IDA histone H3 acetylation
GO:0043967 IDA histone H4 acetylation
GO:0045618 IDA positive regulation of keratinocyte differentiation
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046683 IEP response to organophosphorus
GO:0048386 IDA positive regulation of retinoic acid receptor signaling pathway
GO:0050718 IMP positive regulation of interleukin-1 beta secretion
GO:0060416 IDA response to growth hormone

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108703 Trim16-002 protein_coding Mus_musculus 0 1219
ENSMUST00000055006 Trim16-001 protein_coding Mus_musculus 0 1219
ENSMUST00000128623 Trim16-005 processed_transcript Mus_musculus 0 1133
ENSMUST00000072639 Trim16-004 protein_coding Mus_musculus 0 985

Loading