C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif containing 16
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000221926 TRIM16 9606 - 17:15627960-15684311 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000336708 TRIM16-201 15627967-15682879 protein_coding
  ENST00000416464 TRIM16-002 15627960-15684299 protein_coding
  ENST00000460728 TRIM16-006 15636222-15684283 processed_transcript
  ENST00000473368 TRIM16-004 15631659-15632923 retained_intron
  ENST00000473540 TRIM16-007 15632632-15684273 processed_transcript
  ENST00000473659 TRIM16-005 15654262-15684275 processed_transcript
  ENST00000494759 TRIM16-003 15654390-15680918 nonsense_mediated_decay
  ENST00000577326 TRIM16-013 15628696-15632035 retained_intron
  ENST00000577372 TRIM16-012 15632531-15643275 protein_coding
  ENST00000577446 TRIM16-024 15627966-15636143 protein_coding
  ENST00000577886 TRIM16-025 15627960-15642964 protein_coding
  ENST00000578237 TRIM16-001 15627960-15684300 protein_coding
  ENST00000578744 TRIM16-019 15632594-15680930 protein_coding
  ENST00000579219 TRIM16-020 15628648-15642934 protein_coding
  ENST00000579272 TRIM16-010 15642734-15684297 processed_transcript
  ENST00000579535 TRIM16-015 15677175-15684301 processed_transcript
  ENST00000579630 TRIM16-008 15682854-15684311 processed_transcript
  ENST00000579843 TRIM16-009 15681088-15684299 processed_transcript
  ENST00000580110 TRIM16-014 15629161-15642932 protein_coding
  ENST00000580388 TRIM16-018 15677631-15684298 processed_transcript
  ENST00000581200 TRIM16-022 15636206-15684310 protein_coding
  ENST00000581224 TRIM16-017 15636204-15684297 processed_transcript
  ENST00000582182 TRIM16-027 15677274-15683376 processed_transcript
  ENST00000582708 TRIM16-016 15677575-15684299 processed_transcript
  ENST00000584142 TRIM16-011 15651837-15684266 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000336708ENST00000416464ENST00000460728ENST00000473540ENST00000577326ENST00000577372ENST00000577446ENST00000577886ENST00000578237ENST00000578744ENST00000579219ENST00000579843
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000336708 4.539±0.00 4.196±0.00 N/A 1.616±0.00 2.438±0.44 2.267±0.00 1.078±0.44 1.537±1.38 1.708±0.00 4.403±0.00 1.467±0.34 3.283±1.76 10.420±3.55 1.586±0.00
ENST00000416464 N/A N/A N/A 1.114±0.44 N/A 0.428±0.00 N/A N/A 0.098±0.00 N/A N/A 0.456±0.00 N/A N/A
ENST00000460728 N/A N/A N/A N/A N/A N/A N/A 0.255±0.00 N/A N/A N/A N/A N/A N/A
ENST00000473540 N/A N/A N/A N/A N/A N/A N/A 0.180±0.00 N/A N/A N/A N/A N/A N/A
ENST00000577326 N/A N/A N/A 2.009±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577372 N/A N/A N/A N/A N/A N/A 4.096±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000577446 N/A N/A N/A N/A N/A N/A N/A N/A 0.377±0.00 N/A 0.996±0.00 10.452±0.00 N/A N/A
ENST00000577886 N/A N/A N/A N/A 3.064±0.00 1.550±0.00 0.945±0.00 1.629±0.00 0.380±0.00 N/A N/A 5.730±1.65 9.815±0.47 4.062±0.00
ENST00000578237 N/A N/A N/A N/A 1.190±0.00 0.616±0.00 0.578±0.00 N/A N/A 0.540±0.00 N/A N/A N/A N/A
ENST00000578744 N/A N/A 1.531±0.00 N/A 8.811±0.00 N/A N/A N/A 6.739±0.00 N/A N/A 8.881±0.00 N/A N/A
ENST00000579219 N/A N/A N/A N/A N/A 2.169±0.00 N/A N/A N/A N/A N/A 10.632±0.00 N/A 3.635±0.00
ENST00000579843 N/A N/A N/A 3.192±0.00 N/A N/A N/A 0.538±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QF CIL_0008QF_0001 VISTA 17:15144744-15748248

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IDA DNA binding
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005737 IDA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016605 IDA PML body
GO:0019966 IPI interleukin-1 binding
GO:0032089 IPI NACHT domain binding
GO:0032526 IEP response to retinoic acid
GO:0043966 IDA histone H3 acetylation
GO:0043967 IDA histone H4 acetylation
GO:0045618 IDA positive regulation of keratinocyte differentiation
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046683 IEP response to organophosphorus
GO:0048386 IDA positive regulation of retinoic acid receptor signaling pathway
GO:0050718 IMP positive regulation of interleukin-1 beta secretion
GO:0060416 IDA response to growth hormone

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010673 trim16 tripartite motif-containing 16 protein_coding Danio_rerio
ENSMUSG00000047821 Trim16 tripartite motif-containing 16 protein_coding Mus_musculus

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