C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif-containing 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108703 Trim16-002 ENSMUSG00000047821 10090 + 11:62820469-62842936 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000108703
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000108703 1.848±0.00 2.275±0.43 0.146±0.00 2.570±2.55 5.300±1.03 0.568±0.19 0.417±0.00 0.098±0.04 5.525±1.69 3.822±0.46 1.091±0.52 0.819±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QF CIL_0008QF_0002 VISTA 11:62683404-63286950
CIL_0000DU CIL_0000DU_0002 CGP 11:62753377-62850808
CIL_0005CX CIL_0005CX_0002 CGP 11:62820231-62877465

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000336708 TRIM16-201 protein_coding Homo_sapiens 0 1389
ENST00000395671 TRIM16L-001 protein_coding Homo_sapiens 0 1197
ENST00000414850 TRIM16L-014 protein_coding Homo_sapiens 0 628
ENST00000416464 TRIM16-002 protein_coding Homo_sapiens 0 1219
ENST00000424146 TRIM16L-003 protein_coding Homo_sapiens 3e-36 156
ENST00000449552 TRIM16L-012 protein_coding Homo_sapiens 0 1197
ENST00000455584 RP11-385D13.1-001 protein_coding Homo_sapiens 0 966
ENST00000571542 TRIM16L-007 protein_coding Homo_sapiens 0 717
ENST00000571708 TRIM16L-011 protein_coding Homo_sapiens 0 1197
ENST00000572555 TRIM16L-009 protein_coding Homo_sapiens 0 1197
ENST00000574042 TRIM16L-019 protein_coding Homo_sapiens 0 734
ENST00000577326 TRIM16-013 retained_intron Homo_sapiens 0 673
ENST00000577446 TRIM16-024 protein_coding Homo_sapiens 0 761
ENST00000577886 TRIM16-025 protein_coding Homo_sapiens 0 1219
ENST00000577969 TRIM16L-018 nonsense_mediated_decay Homo_sapiens 0 257
ENST00000578237 TRIM16-001 protein_coding Homo_sapiens 0 1389
ENST00000579219 TRIM16-020 protein_coding Homo_sapiens 0 636

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