C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: thyroid hormone receptor, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000578218 THRA-009 ENSG00000126351 9606 + 17:40062193-40083866 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098Y CIL_00098Y_0001 VISTA 17:39768583-40372873
CIL_0002PX CIL_0002PX_0001 CGP 17:40015361-40061215
CIL_0002KL CIL_0002KL_0001 CGP 17:40019097-40093867
CIL_0002L8 CIL_0002L8_0001 CGP 17:40058290-40100725

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0004887 IEA thyroid hormone receptor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103139 Thra-003 protein_coding Mus_musculus 0 737
ENSMUST00000064187 Thra-001 protein_coding Mus_musculus 0 737
ENSMUST00000152195 Thra-002 processed_transcript Mus_musculus 0 686
ENSMUST00000153043 Thra-007 protein_coding Mus_musculus 0 634
ENSMUST00000124072 Thra-004 protein_coding Mus_musculus 0 442
ENSMUST00000150693 Thra-006 processed_transcript Mus_musculus 0 394
ENSMUST00000153468 Thra-009 processed_transcript Mus_musculus 0 394
ENSMUST00000124130 Thra-008 processed_transcript Mus_musculus 1e-33 147

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