C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: G protein-coupled receptor kinase interacting ArfGAP 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000579937 GIT1-006 ENSG00000108262 9606 - 17:29574451-29589592 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLungENST00000579937
Transcript ID Brain Breast Colon Heart Kidney Lung
ENST00000579937 3.566±0.00 2.566±0.00 1.043±0.00 1.156±0.00 0.757±0.00 2.424±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009BZ CIL_0009BZ_0001 VISTA 17:29367684-29969856
CIL_000873 CIL_000873_0001 VISTA 17:29367702-29969870
CIL_0004GJ CIL_0004GJ_0002 CGP 17:29573469-29614761

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005925 IDA focal adhesion
GO:0008060 IEA ARF GTPase activator activity
GO:0008270 IEA zinc ion binding
GO:0016235 IDA aggresome
GO:0032312 IEA regulation of ARF GTPase activity
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100812 Git1-004 protein_coding Mus_musculus 0 2632
ENSMUST00000037285 Git1-001 protein_coding Mus_musculus 0 2556
ENSMUST00000152428 Git1-005 retained_intron Mus_musculus 0 839
ENSMUST00000127302 Git1-002 retained_intron Mus_musculus 0 645
ENSMUST00000139410 Git1-003 retained_intron Mus_musculus 0 566
ENSMUST00000128796 Git1-006 retained_intron Mus_musculus 0 257
ENSDART00000057696 git1-001 protein_coding Danio_rerio 4e-26 124

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