C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GATA binding protein 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000581694 GATA6-002 ENSG00000141448 9606 + 18:22170933-22200880 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderMuscleENST00000581694
Transcript ID Bladder Muscle
ENST00000581694 0.180±0.00 0.353±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005NR CIL_0005NR_0001 CGP 18:21704957-22202528
CIL_0008XC CIL_0008XC_0001 VISTA 18:21894022-22494333
CIL_0008XC CIL_0008XC_0002 VISTA 18:21894333-22494345
CIL_0008XC CIL_0008XC_0003 VISTA 18:21894346-22494570

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000981 IMP sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003148 IMP outflow tract septum morphogenesis
GO:0003677 IEA DNA binding
GO:0003700 IDA:IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0007596 TAS blood coagulation
GO:0008134 IPI transcription factor binding
GO:0008270 IEA zinc ion binding
GO:0008584 IEP male gonad development
GO:0019901 IPI protein kinase binding
GO:0032911 IMP negative regulation of transforming growth factor beta1 production
GO:0032912 IMP negative regulation of transforming growth factor beta2 production
GO:0042493 IMP response to drug
GO:0043066 IMP negative regulation of apoptotic process
GO:0043565 IEA sequence-specific DNA binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045766 IDA positive regulation of angiogenesis
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0051145 IMP smooth muscle cell differentiation
GO:0060575 IDA intestinal epithelial cell differentiation
GO:0060947 IMP cardiac vascular smooth muscle cell differentiation
GO:0070848 IDA response to growth factor
GO:0071158 IDA positive regulation of cell cycle arrest
GO:0071456 IDA cellular response to hypoxia

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047762 Gata6-201 protein_coding Mus_musculus 0 1869

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