C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000585345 RP11-178C3.6-001 ENSG00000267526 9606 - 17:60063004-60064782 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartOvaryPlacentaTestisENST00000585345
Transcript ID Adrenal Brain Breast Colon Heart Ovary Placenta Testis
ENST00000585345 0.072±0.00 0.026±0.01 0.051±0.05 0.152±0.00 0.013±0.00 0.097±0.10 0.013±0.00 0.049±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081F CIL_00081F_0001 VISTA 17:59485788-60087415
CIL_0008Y2 CIL_0008Y2_0001 VISTA 17:59536739-60138754
CIL_0008VS CIL_0008VS_0001 VISTA 17:59556856-60159441

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178605 Galnt1-201 protein_coding Mus_musculus 2.94273e-44 183
ENSMUST00000170243 Galnt1-002 protein_coding Mus_musculus 2.94273e-44 183
ENSMUST00000000430 Galnt1-001 protein_coding Mus_musculus 2.94273e-44 183

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