C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170243 Galnt1-002 ENSMUSG00000000420 10090 + 18:24205767-24286810 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000170243
Transcript ID Adipose Brain Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000170243 3.449±0.00 3.241±0.00 4.096±1.89 3.274±1.36 3.740±0.62 1.264±0.08 2.648±0.40 4.226±1.00 12.016±0.00 1.470±0.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002FM CIL_0002FM_0003 CGP 18:24104757-24286818
CIL_00002F CIL_00002F_0002 CGP 18:24205344-24477765

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004653 IDA polypeptide N-acetylgalactosaminyltransferase activity
GO:0005576 IEA extracellular region
GO:0005794 IEA Golgi apparatus
GO:0006493 IDA protein O-linked glycosylation
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0018242 IEA protein O-linked glycosylation via serine
GO:0018243 IEA protein O-linked glycosylation via threonine
GO:0030145 ISS manganese ion binding
GO:0030246 IEA carbohydrate binding
GO:0048471 IEA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000269195 GALNT1-001 protein_coding Homo_sapiens 0 2939
ENST00000585345 RP11-178C3.6-001 processed_pseudogene Homo_sapiens 2.94273e-44 183
ENST00000589189 GALNT1-004 nonsense_mediated_decay Homo_sapiens 0 1917
ENST00000590654 GALNT1-003 nonsense_mediated_decay Homo_sapiens 0 2324
ENST00000591081 GALNT1-002 protein_coding Homo_sapiens 0 610
ENST00000591924 GALNT1-006 protein_coding Homo_sapiens 0 617

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