C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000178605 Galnt1-201 ENSMUSG00000000420 10090 + 18:24232597-24286810 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000178605
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000178605 16.368±0.65 7.214±3.60 18.323±0.19 9.944±6.21 20.061±2.64 10.042±3.35 11.834±1.89 17.763±1.64 18.024±9.89 17.527±2.07 16.462±2.09 14.656±8.28 20.075±8.75 4.395±0.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002FM CIL_0002FM_0003 CGP 18:24104757-24286818
CIL_00002F CIL_00002F_0002 CGP 18:24205344-24477765

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004653 IDA polypeptide N-acetylgalactosaminyltransferase activity
GO:0005576 IEA extracellular region
GO:0005794 IEA Golgi apparatus
GO:0006493 IDA protein O-linked glycosylation
GO:0016021 IEA integral component of membrane
GO:0030145 ISS manganese ion binding
GO:0030246 IEA carbohydrate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000269195 GALNT1-001 protein_coding Homo_sapiens 0 2939
ENST00000585345 RP11-178C3.6-001 processed_pseudogene Homo_sapiens 2.94273e-44 183
ENST00000589189 GALNT1-004 nonsense_mediated_decay Homo_sapiens 0 1917
ENST00000590654 GALNT1-003 nonsense_mediated_decay Homo_sapiens 0 2324
ENST00000591081 GALNT1-002 protein_coding Homo_sapiens 0 610
ENST00000591924 GALNT1-006 protein_coding Homo_sapiens 0 617

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