C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SHC (Src homology 2 domain containing) transforming protein 1 pseudogene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000589195 SHC1P2-001 ENSG00000267691 9606 - 17:44228760-44230228 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000589195
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000589195 0.115±0.00 0.522±0.00 0.332±0.00 0.119±0.00 0.094±0.00 0.077±0.00 0.531±0.00 0.049±0.00 0.094±0.00 0.071±0.00 0.063±0.06 0.052±0.00 0.119±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0001 VISTA 17:43966083-44567774
CIL_0004D5 CIL_0004D5_0002 CGP 17:44205033-44268141

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000191485 Shc1-201 protein_coding Mus_musculus 0 767
ENSMUST00000094378 Shc1-002 protein_coding Mus_musculus 0 767
ENSMUST00000107417 Shc1-003 protein_coding Mus_musculus 0 767
ENSMUST00000039110 Shc1-001 protein_coding Mus_musculus 0 767
ENSMUST00000146306 Shc1-009 processed_transcript Mus_musculus 0 643
ENSMUST00000128238 Shc1-007 protein_coding Mus_musculus 0 616
ENSMUST00000137793 Shc1-008 protein_coding Mus_musculus 0 353
ENSMUST00000125036 Shc1-005 protein_coding Mus_musculus 0 246

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