C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004D5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000035066-ENSDARG00000012881 CGP 7955 3:19931192-19981409
GeneTranscriptPositionBiotype
ENSDARG00000012881 (slc4a1a)
solute carrier family 4, anion exchanger, member 1a 		ENSDART00000020253 (slc4a1a-201) 19955146-19981249 protein_coding
ENSDART00000029386 (slc4a1a-202) 19955146-19981249 protein_coding
ENSDART00000122181 (slc4a1a-203) 19955146-19981269 protein_coding
ENSDART00000124326 (slc4a1a-001) 19955146-19981409 protein_coding
ENSDARG00000035066 (ubtf)
upstream binding transcription factor, RNA polymerase I 		ENSDART00000056614 (ubtf-001) 19931192-19952956 protein_coding
ENSDART00000126915 (ubtf-002) 19938947-19953067 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0004D5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000108312-ENSG00000004939 CGP 9606 17:44205033-44268141
GeneTranscriptPositionBiotype
ENSG00000004939 (SLC4A1)
solute carrier family 4 (anion exchanger), member 1 (Diego blood group) 		ENST00000262418 (SLC4A1-001) 44248385-44268141 protein_coding
ENST00000399246 (SLC4A1-201) 44248390-44268134 protein_coding
ENST00000471005 (SLC4A1-003) 44260404-44262066 processed_transcript
ENST00000497360 (SLC4A1-002) 44257193-44268124 retained_intron
ENST00000498270 (SLC4A1-004) 44260805-44268141 retained_intron
ENSG00000108312 (UBTF)
upstream binding transcription factor, RNA polymerase I 		ENST00000302904 (UBTF-002) 44205033-44221626 protein_coding
ENST00000343638 (UBTF-001) 44205033-44220963 protein_coding
ENST00000393606 (UBTF-004) 44207116-44219750 protein_coding
ENST00000436088 (UBTF-005) 44206920-44219498 protein_coding
ENST00000526094 (UBTF-007) 44207240-44218502 protein_coding
ENST00000527034 (UBTF-014) 44206594-44220854 protein_coding
ENST00000529042 (UBTF-010) 44212180-44213356 retained_intron
ENST00000529373 (UBTF-011) 44209435-44211002 protein_coding
ENST00000529383 (UBTF-008) 44207240-44218502 protein_coding
ENST00000529947 (UBTF-013) 44207487-44209422 nonsense_mediated_decay
ENST00000530828 (UBTF-009) 44213225-44218502 protein_coding
ENST00000531368 (UBTF-012) 44209219-44210142 retained_intron
ENST00000533177 (UBTF-006) 44206595-44219121 protein_coding
ENST00000537550 (UBTF-015) 44215354-44218540 processed_transcript
ENSG00000267691 (SHC1P2)
SHC (Src homology 2 domain containing) transforming protein 1 pseudogene 2 		ENST00000589195 (SHC1P2-001) 44228760-44230228 processed_pseudogene
ENSG00000275107 (MIR6782)
microRNA 6782 		ENST00000619539 (MIR6782-201) 44207771-44207839 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0004D5_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020923-ENSMUSG00000006574 CGP 10090 11:102304560-102366203
GeneTranscriptPositionBiotype
ENSMUSG00000006574 (Slc4a1)
solute carrier family 4 (anion exchanger), member 1 		ENSMUST00000006749 (Slc4a1-001) 102348824-102365280 protein_coding
ENSMUST00000128405 (Slc4a1-002) 102360195-102365247 processed_transcript
ENSMUST00000145636 (Slc4a1-003) 102360162-102363704 processed_transcript
ENSMUST00000149993 (Slc4a1-004) 102359082-102360568 processed_transcript
ENSMUST00000151050 (Slc4a1-005) 102361387-102366203 processed_transcript
ENSMUSG00000020923 (Ubtf)
upstream binding transcription factor, RNA polymerase I 		ENSMUST00000006754 (Ubtf-001) 102305924-102319096 protein_coding
ENSMUST00000079589 (Ubtf-006) 102305924-102316680 protein_coding
ENSMUST00000107115 (Ubtf-005) 102305924-102316704 protein_coding
ENSMUST00000107117 (Ubtf-003) 102305924-102317871 protein_coding
ENSMUST00000107119 (Ubtf-008) 102305993-102317287 protein_coding
ENSMUST00000107123 (Ubtf-011) 102306298-102317635 protein_coding
ENSMUST00000128016 (Ubtf-004) 102313609-102316705 protein_coding
ENSMUST00000146896 (Ubtf-012) 102311755-102316675 protein_coding
ENSMUST00000173870 (Ubtf-007) 102306486-102319742 protein_coding
ENSMUST00000174302 (Ubtf-002) 102304560-102319096 protein_coding
ENSMUST00000174400 (Ubtf-009) 102309040-102309908 retained_intron
ENSMUST00000174726 (Ubtf-010) 102308530-102309440 retained_intron
ENSMUST00000178839 (Ubtf-201) 102304561-102319096 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004D5_0001ENSDARG00000012881ENSDART00000020253ENSDART00000029386ENSDART00000122181ENSDART00000124326ENSDARG00000035066ENSDART00000056614ENSDART00000126915CIL_0004D5_0002ENSG00000004939ENST00000262418ENST00000399246ENST00000471005ENST00000497360ENST00000498270ENSG00000108312ENST00000302904ENST00000343638ENST00000393606ENST00000436088ENST00000526094ENST00000527034ENST00000529042ENST00000529373ENST00000529383ENST00000529947ENST00000530828ENST00000531368ENST00000533177ENST00000537550ENSG00000267691ENST00000589195ENSG00000275107ENST00000619539CIL_0004D5_0003ENSMUSG00000006574ENSMUST00000006749ENSMUST00000128405ENSMUST00000145636ENSMUST00000149993ENSMUST00000151050ENSMUSG00000020923ENSMUST00000006754ENSMUST00000079589ENSMUST00000107115ENSMUST00000107117ENSMUST00000107119ENSMUST00000107123ENSMUST00000128016ENSMUST00000146896ENSMUST00000173870ENSMUST00000174302ENSMUST00000174400ENSMUST00000174726ENSMUST00000178839
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004D5_0001ENSDARG00000012881ENSDART00000020253ENSDART00000029386ENSDART00000122181ENSDART00000124326ENSDARG00000035066ENSDART00000056614CIL_0004D5_0002ENSG00000004939ENST00000262418ENST00000399246ENST00000497360ENST00000498270ENSG00000108312ENST00000302904ENST00000343638ENST00000393606ENST00000436088ENST00000526094ENST00000529373ENST00000529383ENST00000533177ENSG00000267691ENST00000589195ENSG00000275107ENST00000619539CIL_0004D5_0003ENSMUSG00000006574ENSMUST00000006749ENSMUST00000145636ENSMUSG00000020923ENSMUST00000006754ENSMUST00000079589ENSMUST00000107115ENSMUST00000107117ENSMUST00000107119ENSMUST00000107123ENSMUST00000173870ENSMUST00000174302ENSMUST00000174726ENSMUST00000178839
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000012881 ENSDART00000020253 N/A N/A N/A 0.136±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000029386 N/A N/A N/A 1.037±0.71 N/A N/A 29.015±3.07 16.257±0.00 0.342±0.00 N/A 2.536±0.00 N/A N/A N/A
ENSDART00000122181 N/A N/A N/A 0.432±0.00 N/A N/A 22.101±3.40 16.578±1.85 0.218±0.00 N/A N/A N/A N/A N/A
ENSDART00000124326 N/A N/A N/A N/A N/A N/A 11.206±0.00 4.732±0.00 0.118±0.00 N/A 0.819±0.00 N/A N/A N/A
ENSDARG00000035066 ENSDART00000056614 N/A N/A N/A 19.009±2.84 N/A N/A 8.283±4.20 12.367±0.00 1.515±0.00 N/A 4.232±0.00 N/A N/A N/A
ENSDART00000126915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000004939 ENST00000262418 1.683±0.00 0.106±0.00 N/A 0.055±0.00 0.149±0.00 3.112±0.00 0.042±0.00 0.122±0.00 0.077±0.00 13.831±0.00 N/A 0.013±0.00 3.801±1.20 0.869±0.00
ENST00000399246 N/A 0.082±0.00 N/A 0.040±0.03 0.020±0.00 0.658±0.00 N/A N/A 0.026±0.00 N/A 0.097±0.00 0.051±0.00 5.307±0.00 0.342±0.08
ENST00000471005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497360 0.907±0.00 0.073±0.00 N/A N/A N/A N/A 0.029±0.00 N/A N/A 0.048±0.00 N/A 0.130±0.11 N/A N/A
ENST00000498270 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.618±0.00 N/A N/A N/A
ENSG00000108312 ENST00000302904 N/A N/A N/A N/A N/A N/A N/A N/A 0.888±0.00 N/A N/A N/A N/A N/A
ENST00000343638 N/A N/A 1.266±0.00 1.238±0.00 N/A 1.233±0.00 0.999±0.66 0.544±0.00 1.211±0.00 1.471±0.39 1.796±1.37 7.782±5.31 7.715±2.14 5.360±0.00
ENST00000393606 5.562±0.00 11.245±0.00 1.080±0.00 5.525±3.82 10.043±0.00 3.852±2.56 2.806±1.61 4.944±3.96 1.729±0.00 N/A N/A 20.458±0.00 N/A N/A
ENST00000436088 7.641±0.00 10.611±0.00 N/A 5.633±0.00 7.196±0.00 6.482±3.82 4.758±0.00 10.186±0.00 2.354±1.27 6.495±0.00 10.223±0.00 14.293±11.13 7.328±1.95 12.443±4.42
ENST00000526094 N/A N/A 0.825±0.00 N/A N/A N/A 0.718±0.00 2.104±0.00 N/A N/A 2.654±0.00 2.930±0.00 N/A N/A
ENST00000527034 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529042 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529373 N/A N/A 5.670±0.00 N/A 14.329±0.00 6.039±0.00 N/A N/A 5.815±0.00 9.194±0.00 N/A N/A 21.275±0.00 N/A
ENST00000529383 N/A N/A 1.273±0.00 2.576±0.00 2.182±0.00 N/A N/A N/A N/A 4.436±0.00 N/A 1.258±0.00 N/A N/A
ENST00000529947 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531368 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533177 6.339±0.00 9.192±0.00 N/A 5.363±0.00 9.784±0.00 10.394±0.00 4.147±0.00 7.708±0.00 2.873±0.00 7.018±0.00 16.245±0.00 16.491±1.95 12.487±0.16 15.148±0.00
ENST00000537550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000267691 ENST00000589195 0.115±0.00 0.522±0.00 N/A 0.332±0.00 0.119±0.00 0.094±0.00 0.077±0.00 0.531±0.00 0.049±0.00 0.094±0.00 0.071±0.00 0.063±0.06 0.052±0.00 0.119±0.01
ENSG00000275107 ENST00000619539 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.529±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000006574 ENSMUST00000006749 0.038±0.02 0.015±0.01 0.004±0.00 0.387±0.26 0.026±0.01 0.068±0.02 0.984±0.79 N/A 222.816±252.62 0.461±0.20 0.016±0.01 0.035±0.02 19.851±16.72 0.041±0.00
ENSMUST00000128405 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.069±0.00 190.769±140.52 N/A
ENSMUST00000149993 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151050 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000020923 ENSMUST00000006754 4.167±0.00 5.724±1.25 N/A N/A 7.745±3.31 5.998±0.82 1.632±0.00 N/A 2.228±0.52 5.188±0.01 N/A 6.881±2.47 N/A N/A
ENSMUST00000079589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.162±0.00
ENSMUST00000107115 N/A N/A N/A N/A N/A N/A N/A N/A 8.272±3.68 N/A N/A N/A N/A N/A
ENSMUST00000107117 6.019±2.14 8.081±3.18 6.853±1.69 9.328±1.69 5.746±0.41 6.062±1.87 1.873±0.05 5.761±1.45 3.998±1.60 5.334±1.30 N/A 7.905±1.28 4.884±0.28 2.038±0.67
ENSMUST00000107119 6.321±1.45 N/A 7.368±2.92 10.754±4.72 8.969±0.09 3.643±0.00 4.903±0.99 8.953±1.56 4.639±1.63 6.201±0.87 9.417±1.05 17.784±2.66 13.541±7.40 0.650±0.00
ENSMUST00000107123 N/A N/A 9.100±3.13 26.117±24.02 2.919±0.00 N/A 1.762±0.18 N/A 13.972±8.94 N/A 3.217±1.03 38.492±22.73 24.676±20.13 4.347±2.72
ENSMUST00000128016 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.839±0.00 N/A N/A N/A
ENSMUST00000174302 4.208±0.83 N/A 3.855±0.00 8.523±0.00 3.577±0.56 4.581±0.48 1.761±0.34 3.832±0.89 5.200±3.46 4.836±0.00 N/A 4.745±1.31 3.599±1.37 1.761±0.73
ENSMUST00000174400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 136.511±0.00 N/A 26.699±0.00
ENSMUST00000178839 4.185±1.32 5.627±0.29 5.898±1.13 N/A 4.463±1.05 5.120±1.90 1.862±0.32 3.912±1.42 3.678±1.67 4.692±1.06 1.555±0.16 7.391±2.33 2.514±0.00 1.778±0.68

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