C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase type IVA, member 2 pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000590314 PTP4A2P1-001 ENSG00000267185 9606 + 17:42533532-42534009 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartLiverMuscleOvaryPlacentaTestisENST00000590314
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Liver Muscle Ovary Placenta Testis
ENST00000590314 0.223±0.00 0.537±0.00 0.508±0.00 0.051±0.00 0.531±0.26 0.023±0.00 0.112±0.00 0.022±0.00 0.375±0.30 0.167±0.02 0.117±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00046D CIL_00046D_0001 CGP 17:42458844-42544449

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000165853 Ptp4a2-201 protein_coding Mus_musculus 0 634
ENSMUST00000030578 Ptp4a2-001 protein_coding Mus_musculus 0 634
ENSMUST00000118834 Gm13422-001 processed_pseudogene Mus_musculus 0 592
ENSMUST00000136880 Gm11780-001 processed_pseudogene Mus_musculus 0 333
ENSMUST00000141754 Ptp4a2-006 processed_transcript Mus_musculus 0 305

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