C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000595437 FARP1-011 ENSG00000152767 9606 + 13:98142562-98449773 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastKidneyOvaryPlacentaTestisENST00000595437
Transcript ID Adipose Bladder Brain Breast Kidney Ovary Placenta Testis
ENST00000595437 7.849±0.00 12.717±0.00 3.959±0.00 4.997±0.00 7.837±5.03 8.725±1.58 9.807±1.13 10.375±0.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004FZ CIL_0004FZ_0002 CGP 13:97953658-98455176

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005737 IDA cytoplasm
GO:0005829 IEA cytosol
GO:0005856 IEA cytoskeleton
GO:0007416 IEA synapse assembly
GO:0008092 IEA cytoskeletal protein binding
GO:0030425 IEA dendrite
GO:0030676 IEA Rac guanyl-nucleotide exchange factor activity
GO:0031234 IEA extrinsic component of cytoplasmic side of plasma membrane
GO:0032855 IEA positive regulation of Rac GTPase activity
GO:0035023 IEA regulation of Rho protein signal transduction
GO:0048365 IEA Rac GTPase binding
GO:0048813 IEA dendrite morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026635 Farp1-001 protein_coding Mus_musculus 0 2327
ENSMUST00000135010 Farp1-002 protein_coding Mus_musculus 0 701
ENSMUST00000153607 Farp1-003 processed_transcript Mus_musculus 0 669
ENSMUST00000137971 Farp1-004 retained_intron Mus_musculus 0 516
ENSDART00000013400 farp2-201 protein_coding Danio_rerio 0 272
ENSDART00000153595 farp2-001 protein_coding Danio_rerio 0 272

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