C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 146
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000610153 RNF146-008 ENSG00000118518 9606 + 6:127266883-127288362 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000610153
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000610153 8.868±0.00 7.148±0.00 1.357±0.00 5.842±4.06 8.088±0.00 9.939±8.32 14.725±0.00 10.007±0.00 3.922±2.02 15.955±0.00 11.212±0.00 8.955±4.08 8.282±1.57 16.187±6.34

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005829 IDA cytosol
GO:0008270 IEA zinc ion binding
GO:0016055 IEA Wnt signaling pathway
GO:0016874 IEA ligase activity
GO:0042787 IMP protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0051865 IDA protein autoubiquitination
GO:0070936 IMP protein K48-linked ubiquitination
GO:0072572 IDA poly-ADP-D-ribose binding
GO:0090263 IMP positive regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037548 Rnf146-201 protein_coding Mus_musculus 0 1844
ENSMUST00000160144 Rnf146-001 protein_coding Mus_musculus 0 1844
ENSMUST00000160372 Rnf146-002 protein_coding Mus_musculus 0 1840
ENSMUST00000162335 Rnf146-003 protein_coding Mus_musculus 0 1528
ENSMUST00000161508 Rnf146-004 protein_coding Mus_musculus 0 907
ENSMUST00000020034 Echdc1-001 protein_coding Mus_musculus 0 324

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