C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 146
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037548 Rnf146-201 ENSMUSG00000038876 10090 - 10:29344178-29362442 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037548
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037548 10.149±0.00 2.560±0.68 6.978±2.72 4.117±0.62 12.074±0.00 1.335±0.09 2.526±0.16 5.493±1.68 5.492±2.98 3.828±0.58 1.867±0.34 4.539±4.09 4.567±2.38 5.507±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00065S CIL_00065S_0002 CGP 10:29211643-29346661

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005634 IEA nucleus
GO:0005829 ISS cytosol
GO:0008270 IEA zinc ion binding
GO:0016055 IEA Wnt signaling pathway
GO:0016874 IEA ligase activity
GO:0042787 ISS protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0051865 ISS protein autoubiquitination
GO:0070936 ISS protein K48-linked ubiquitination
GO:0072572 ISS poly-ADP-D-ribose binding
GO:0090263 ISS positive regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000309649 RNF146-201 protein_coding Homo_sapiens 0 1847
ENST00000356799 RNF146-002 protein_coding Homo_sapiens 0 1847
ENST00000368289 ECHDC1-004 protein_coding Homo_sapiens 0 305
ENST00000368291 ECHDC1-009 protein_coding Homo_sapiens 0 305
ENST00000368295 ECHDC1-017 nonsense_mediated_decay Homo_sapiens 0 305
ENST00000368314 RNF146-001 protein_coding Homo_sapiens 0 1847
ENST00000430841 ECHDC1-006 protein_coding Homo_sapiens 0 305
ENST00000454591 ECHDC1-007 protein_coding Homo_sapiens 0 305
ENST00000454859 ECHDC1-010 protein_coding Homo_sapiens 0 305
ENST00000474289 ECHDC1-002 protein_coding Homo_sapiens 0 305
ENST00000475319 ECHDC1-014 retained_intron Homo_sapiens 0 305
ENST00000476956 RNF146-005 protein_coding Homo_sapiens 0 366
ENST00000479525 ECHDC1-015 nonsense_mediated_decay Homo_sapiens 0 305
ENST00000480444 RNF146-006 protein_coding Homo_sapiens 0 377
ENST00000489534 RNF146-004 processed_transcript Homo_sapiens 0 453
ENST00000528402 ECHDC1-018 protein_coding Homo_sapiens 0 305
ENST00000531967 ECHDC1-013 protein_coding Homo_sapiens 0 305
ENST00000608991 RNF146-011 protein_coding Homo_sapiens 0 1844
ENST00000610153 RNF146-008 protein_coding Homo_sapiens 0 1844
ENST00000616343 RNF146-202 protein_coding Homo_sapiens 0 1847

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