C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMAD family member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000611848 SMAD4-017 ENSG00000141646 9606 + 18:51058353-51079143 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartKidneyLungMusclePlacentaENST00000611848
Transcript ID Colon Heart Kidney Lung Muscle Placenta
ENST00000611848 10.940±0.00 10.378±0.00 11.773±0.00 9.103±0.00 3.192±0.00 10.337±1.17

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114939 Smad4-002 protein_coding Mus_musculus 0 952
ENSMUST00000025393 Smad4-001 protein_coding Mus_musculus 0 952
ENSMUST00000142672 Smad4-005 processed_transcript Mus_musculus 0 346
ENSMUST00000147315 Smad4-006 processed_transcript Mus_musculus 5e-28 130

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