C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMAD family member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000142672 Smad4-005 ENSMUSG00000024515 10090 - 18:73640223-73662775 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000142672
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000142672 7.269±1.73 11.790±0.77 11.540±2.88 26.915±3.21 6.849±0.69 6.683±0.20 5.048±1.21 10.173±0.73 15.478±0.00 2.215±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001B6 CIL_0001B6_0002 CGP 18:73573044-73703780

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000342988 SMAD4-201 protein_coding Homo_sapiens 0 693
ENST00000398417 SMAD4-001 protein_coding Homo_sapiens 0 693
ENST00000590722 RP11-729L2.2-001 nonsense_mediated_decay Homo_sapiens 6e-36 156
ENST00000591126 SMAD4-002 retained_intron Homo_sapiens 0 693
ENST00000592186 SMAD4-005 nonsense_mediated_decay Homo_sapiens 0 623
ENST00000592911 SMAD4-009 processed_transcript Homo_sapiens 3e-40 169
ENST00000611848 SMAD4-017 nonsense_mediated_decay Homo_sapiens 0 346

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