C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: dachshund family transcription factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000613252 DACH1-001 ENSG00000276644 9606 - 13:71437966-71867192 protein_coding

Homo sapiens EnsemblGRCh38

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000613252
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000613252 1.502±0.00 0.298±0.00 1.199±0.00 0.564±0.41 0.208±0.00 0.917±0.38 0.300±0.19 2.702±0.00 0.047±0.00 1.081±0.67 0.218±0.00 0.446±0.14 1.578±0.60 1.557±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VF CIL_0003VF_0001 CGP 13:69700594-71867192
CIL_0007L7 CIL_0007L7_0001 UCNEbase 13:70667313-71866528
CIL_0008WD CIL_0008WD_0001 VISTA 13:70848326-71450830
CIL_0008WC CIL_0008WC_0001 VISTA 13:70900716-71501236
CIL_000957 CIL_000957_0001 VISTA 13:70919290-71521202
CIL_000844 CIL_000844_0001 VISTA 13:70919510-71520241
CIL_0009B5 CIL_0009B5_0001 VISTA 13:71189244-71789684
CIL_0008M4 CIL_0008M4_0001 VISTA 13:71381704-71982907
CIL_0008M8 CIL_0008M8_0001 VISTA 13:71381958-71982706
CIL_000958 CIL_000958_0001 VISTA 13:71426717-72028802
CIL_0004PD CIL_0004PD_0002 CGP 13:71437966-72727687

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0001075 IEA RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001967 IEA suckling behavior
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0005737 IEA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007585 IEA respiratory gaseous exchange
GO:0008283 IEA cell proliferation
GO:0010944 IMP negative regulation of transcription by competitive promoter binding
GO:0030336 IDA negative regulation of cell migration
GO:0046545 IEA development of primary female sexual characteristics
GO:0048147 IEA negative regulation of fibroblast proliferation
GO:0051123 IEA RNA polymerase II transcriptional preinitiation complex assembly
GO:0060244 IEA negative regulation of cell proliferation involved in contact inhibition

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000069334 Dach1-002 protein_coding Mus_musculus 0 5151
ENSMUST00000071533 Dach1-001 protein_coding Mus_musculus 0 3504
ENSMUST00000156684 Dach1-003 retained_intron Mus_musculus 0 3175
ENSDART00000101070 dachd-001 protein_coding Danio_rerio 0 998

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