C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin IF
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000613525 MYO1F-201 ENSG00000142347 9606 - 19:8520797-8577577 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000613525
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000613525 4.092±0.00 7.795±0.00 0.163±0.00 0.885±0.00 1.804±0.00 0.692±0.04 0.417±0.35 1.091±0.02 1.309±1.00 4.940±1.86 0.093±0.00 2.280±1.35 6.827±0.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004DS CIL_0004DS_0002 CGP 19:8520790-8610735

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003774 IEA motor activity
GO:0003779 NAS actin binding
GO:0005515 IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005524 IEA:NAS ATP binding
GO:0008150 ND biological_process
GO:0008152 IEA metabolic process
GO:0016459 IEA myosin complex
GO:0016461 NAS unconventional myosin complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087605 Myo1f-001 protein_coding Mus_musculus 0 3618
ENSMUST00000173372 Myo1f-002 nonsense_mediated_decay Mus_musculus 0 3561
ENSMUST00000173426 Myo1f-003 retained_intron Mus_musculus 0 2237
ENSDART00000148304 myo1f-001 protein_coding Danio_rerio 0 1146
ENSDART00000113183 myo1f-201 protein_coding Danio_rerio 0 1123

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