C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: myosin IF
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000142347 MYO1F 9606 - 19:8520790-8577577 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000338257 MYO1F-001 8520790-8577577 protein_coding
  ENST00000594774 MYO1F-007 8551830-8577438 retained_intron
  ENST00000594977 MYO1F-003 8545443-8577435 retained_intron
  ENST00000595046 MYO1F-020 8576442-8577442 processed_transcript
  ENST00000595191 MYO1F-005 8549580-8550656 retained_intron
  ENST00000595325 MYO1F-002 8551666-8577438 retained_intron
  ENST00000596245 MYO1F-018 8525226-8526622 retained_intron
  ENST00000596645 MYO1F-006 8555392-8577433 retained_intron
  ENST00000596675 MYO1F-008 8553350-8577438 protein_coding
  ENST00000596937 MYO1F-013 8548298-8550413 retained_intron
  ENST00000597222 MYO1F-015 8530199-8540052 retained_intron
  ENST00000597459 MYO1F-021 8529809-8530462 retained_intron
  ENST00000598005 MYO1F-014 8526452-8541956 nonsense_mediated_decay
  ENST00000598321 MYO1F-009 8553212-8577438 nonsense_mediated_decay
  ENST00000598529 MYO1F-004 8551423-8554564 retained_intron
  ENST00000598797 MYO1F-019 8530040-8530484 retained_intron
  ENST00000599123 MYO1F-011 8553222-8555777 retained_intron
  ENST00000600825 MYO1F-010 8547854-8550332 retained_intron
  ENST00000600885 MYO1F-016 8522810-8527387 retained_intron
  ENST00000601502 MYO1F-017 8544068-8545718 retained_intron
  ENST00000602136 MYO1F-012 8540319-8548047 nonsense_mediated_decay
  ENST00000613525 MYO1F-201 8520797-8577577 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000594977ENST00000595046ENST00000595325ENST00000597222ENST00000597459ENST00000598005ENST00000598529ENST00000600885ENST00000613525
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000594977 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.189±0.00 N/A N/A
ENST00000595046 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.457±0.00 N/A N/A
ENST00000595325 N/A N/A 0.349±0.00 0.185±0.00 N/A N/A N/A N/A N/A 2.420±0.00 N/A N/A N/A
ENST00000597222 N/A N/A N/A N/A N/A N/A 0.190±0.00 N/A N/A N/A N/A N/A N/A
ENST00000597459 N/A N/A 0.908±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000598005 N/A N/A N/A 2.015±0.00 N/A 0.832±0.00 N/A N/A N/A N/A 0.167±0.00 N/A N/A
ENST00000598529 N/A N/A N/A N/A N/A N/A N/A N/A 0.553±0.00 N/A 0.217±0.00 N/A N/A
ENST00000600885 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.878±0.00 N/A N/A
ENST00000613525 4.092±0.00 7.795±0.00 0.163±0.00 0.885±0.00 1.804±0.00 0.692±0.04 0.417±0.35 1.091±0.02 1.309±1.00 4.940±1.86 0.093±0.00 2.280±1.35 6.827±0.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004DS CIL_0004DS_0002 CGP 19:8520790-8610735

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002446 IEA neutrophil mediated immunity
GO:0003774 IEA motor activity
GO:0003779 NAS actin binding
GO:0005515 IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005524 IEA:NAS ATP binding
GO:0007162 IEA negative regulation of cell adhesion
GO:0008150 ND biological_process
GO:0008152 IEA metabolic process
GO:0016459 IEA myosin complex
GO:0016461 NAS unconventional myosin complex
GO:0030335 IEA positive regulation of cell migration
GO:0030864 IEA cortical actin cytoskeleton
GO:0031941 IEA filamentous actin
GO:0032956 IEA regulation of actin cytoskeleton organization
GO:0043312 IEA neutrophil degranulation
GO:0045088 IEA regulation of innate immune response
GO:0050830 IEA defense response to Gram-positive bacterium

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078734 myo1f myosin IF protein_coding Danio_rerio
ENSMUSG00000024300 Myo1f myosin IF protein_coding Mus_musculus

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