C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin IF
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173372 Myo1f-002 ENSMUSG00000024300 10090 + 17:33555745-33607758 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000173372
Transcript ID Adrenal Brain Breast Colon Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000173372 0.687±0.13 0.486±0.00 1.991±0.98 1.311±0.53 0.489±0.34 0.626±0.09 0.230±0.13 1.625±1.13 0.336±0.03 0.116±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002446 IMP neutrophil mediated immunity
GO:0003674 ND molecular_function
GO:0003774 IEA motor activity
GO:0005524 IEA ATP binding
GO:0007162 IMP negative regulation of cell adhesion
GO:0008152 IEA metabolic process
GO:0016459 IEA myosin complex
GO:0030335 IMP positive regulation of cell migration
GO:0030864 IDA cortical actin cytoskeleton
GO:0031941 IDA filamentous actin
GO:0032956 IMP regulation of actin cytoskeleton organization
GO:0043312 IMP neutrophil degranulation
GO:0045088 IMP regulation of innate immune response
GO:0050830 IMP defense response to Gram-positive bacterium

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000148304 myo1f-001 protein_coding Danio_rerio 0 1266
ENSDART00000113183 myo1f-201 protein_coding Danio_rerio 0 1243
ENSDART00000052539 myo1ea-201 protein_coding Danio_rerio 0 863
ENST00000338257 MYO1F-001 protein_coding Homo_sapiens 0 3561
ENST00000594774 MYO1F-007 retained_intron Homo_sapiens 0 553
ENST00000594977 MYO1F-003 retained_intron Homo_sapiens 0 1670
ENST00000595325 MYO1F-002 retained_intron Homo_sapiens 0 870
ENST00000596675 MYO1F-008 protein_coding Homo_sapiens 0 425
ENST00000597222 MYO1F-015 retained_intron Homo_sapiens 0 839
ENST00000598005 MYO1F-014 nonsense_mediated_decay Homo_sapiens 0 961
ENST00000598321 MYO1F-009 nonsense_mediated_decay Homo_sapiens 0 488
ENST00000598529 MYO1F-004 retained_intron Homo_sapiens 0 691
ENST00000599123 MYO1F-011 retained_intron Homo_sapiens 0 261
ENST00000600885 MYO1F-016 retained_intron Homo_sapiens 0 200
ENST00000601502 MYO1F-017 retained_intron Homo_sapiens 0 259
ENST00000602136 MYO1F-012 nonsense_mediated_decay Homo_sapiens 0 377
ENST00000613525 MYO1F-201 protein_coding Homo_sapiens 0 3561

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