C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TCF3 (E2A) fusion partner (in childhood Leukemia)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000616277 TFPT-206 ENSG00000276296 9606 - CHR_HSCHR19LRC_LRC_S_CTG3_1:54107066-54115801 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 ISS DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:ISS nucleus
GO:0005730 IDA nucleolus
GO:0005737 ISS cytoplasm
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0031011 IDA Ino80 complex
GO:0097190 IDA apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000155592 Tfpt-002 protein_coding Mus_musculus 0 889
ENSMUST00000108641 Tfpt-001 protein_coding Mus_musculus 0 817
ENSMUST00000058880 Tfpt-005 nonsense_mediated_decay Mus_musculus 0 547
ENSMUST00000153143 Tfpt-003 nonsense_mediated_decay Mus_musculus 0 449
ENSMUST00000156194 Tfpt-004 processed_transcript Mus_musculus 0 387

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